myRT

myRT report for GCA_009775555.1_ASM977555v1

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Seq: VSPZ01000101.1 Prevotella sp. isolate SC1188_S41_bin.13 SC1188_S41_SC1188_S41_bin.13_contig_101, whole genome shotgun sequence (4707 bp)
Overview 1 RT 1: 1-4695 bp Neighborhood of RT #1 [1, 4706] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 1-204 bp Feature: gene Location: 265-873 bp Feature: gene Location: 860-2830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283-2105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 283-21 05 bp Feature: domain Description: Intron_maturas2 Location: 2267-2486 bp Feature: domain Description: Intron_maturas2 Location: 2267-2486 bp Feature: domain Description: HNHc Note: nucleases Location: 2651-2807 bp Feature: domain Description: HNHc Note: nucleases Location: 2651 -2807 bp Feature: gene Location: 2992-3147 bp Feature: gene Location: 3255-4706 bp Feature: domain Description: YWFCY Location: 3258-3351 bp Feature: domain Description: YWFCY Location: 3258-3351 bp Feature: domain Description: TrwB_AAD_bind Location: 4470-4695 bp Feature: domain Description: TrwB_AAD_bind Location: 4470-4695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: VSPZ01000002.1 Prevotella sp. isolate SC1188_S41_bin.13 SC1188_S41_SC1188_S41_bin.13_contig_2, whole genome shotgun sequence (133094 bp)
Overview 1 RT 1: 105275-112204 bp Neighborhood of RT #1 [105275, 112422] HsdM HTH_XRE RVT-UG8 RVT-UG3 Relaxase Feature: gene Location: 105275-106771 bp Feature: domain Description: HsdM Location: 105626-106754 bp Feature: domain Description: HsdM Location: 10562 6-106754 bp Feature: gene Location: 106819-107025 bp Feature: domain Description: HTH_XRE Location: 106840-107005 bp Feature: domain Description: HTH_XRE Location: 106840-107005 bp Feature: gene Location: 107287-109296 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 107728-108181 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10772 8-108181 bp Feature: gene Location: 109455-110909 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 109929-110445 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 10992 9-110445 bp Feature: gene Location: 111041-111445 bp Feature: gene Location: 111481-112422 bp Feature: domain Description: Relaxase Location: 111505-112204 bp Feature: domain Description: Relaxase Location: 111505-112 2 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), HTH_XRE (smart00530), RVT-UG8, RVT-UG3, Relaxase (pfam03432)