myRT

myRT report for GCA_009775635.1_ASM977563v1

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Seq: VSQC01000121.1 Bacteroides acidifaciens isolate SC1193_S46_bin.7 SC1193_S46_SC1193_S46_bin.7_contig_121, whole genome shotgun sequence (12798 bp)
Overview 1 RT 1: 7034-12681 bp Neighborhood of RT #1 [7034, 12686] PRK00566 RVT-GII Feature: gene Location: 7034-11317 bp Feature: domain Description: PRK00566 Location: 7055-11276 bp Feature: domain Description: PRK00566 Location: 7055-1 1 276 bp Feature: gene Location: 11377-11625 bp Feature: gene Location: 11793-12686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12117-12681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 1 7-1 2681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional)

Seq: VSQC01000181.1 Bacteroides acidifaciens isolate SC1193_S46_bin.7 SC1193_S46_SC1193_S46_bin.7_contig_181, whole genome shotgun sequence (6099 bp)
Overview 1 RT 1: 232-3095 bp Neighborhood of RT #1 [232, 3095] group_II_RT_mat RVT-GII CcmA Feature: gene Location: 232-444 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 310-433 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 310-433 bp Feature: gene Location: 434-1225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-1094 bp Feature: gene Location: 1359-2258 bp Feature: domain Description: CcmA Location: 1416-2100 bp Feature: domain Description: CcmA Location: 1416-2 100 bp Feature: gene Location: 2265-3095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), group_II_RT_mat (TIGR04416), RVT-GII

Seq: VSQC01000020.1 Bacteroides acidifaciens isolate SC1193_S46_bin.7 SC1193_S46_SC1193_S46_bin.7_contig_20, whole genome shotgun sequence (48124 bp)
Overview 1 RT 1: 31241-39433 bp Neighborhood of RT #1 [31241, 39450] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 31241-31588 bp Feature: gene Location: 31634-32005 bp Feature: gene Location: 32224-33636 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32614-33316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 2614-3 3 3 16 bp Feature: gene Location: 33644-34000 bp Feature: domain Description: Avd_like Location: 33671-33980 bp Feature: domain Description: Avd_like Location: 3 3 671-3 3 980 bp Feature: gene Location: 34042-39450 bp Feature: domain Description: DUF1566 Location: 39178-39433 bp Feature: domain Description: DUF1566 Location: 3 9178-3 943 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: VSQC01000005.1 Bacteroides acidifaciens isolate SC1193_S46_bin.7 SC1193_S46_SC1193_S46_bin.7_contig_5, whole genome shotgun sequence (96386 bp)
Overview 1 RT 1: 43870-48040 bp Neighborhood of RT #1 [43870, 48066] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 43870-44037 bp Feature: gene Location: 44584-44994 bp Feature: gene Location: 45295-46716 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45667-46372 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 5667-4 6372 bp Feature: gene Location: 46731-47111 bp Feature: domain Description: Avd_like Location: 46758-47064 bp Feature: domain Description: Avd_like Location: 4 6758-4 7064 bp Feature: gene Location: 47257-48066 bp Feature: domain Description: DUF1566 Location: 47791-48040 bp Feature: domain Description: DUF1566 Location: 4 7791-4 804 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: VSQC01000062.1 Bacteroides acidifaciens isolate SC1193_S46_bin.7 SC1193_S46_SC1193_S46_bin.7_contig_62, whole genome shotgun sequence (24680 bp)
Overview 1 RT 1: 22374-24177 bp Neighborhood of RT #1 [22374, 24677] RVT-DGRs Feature: gene Location: 22374-22607 bp Feature: gene Location: 22591-23100 bp Feature: gene Location: 23166-24677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23580-24177 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 235 80-24177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VSQC01000072.1 Bacteroides acidifaciens isolate SC1193_S46_bin.7 SC1193_S46_SC1193_S46_bin.7_contig_72, whole genome shotgun sequence (22554 bp)
Overview 1 RT 1: 6695-10074 bp Neighborhood of RT #1 [6695, 10074] RVT-DGRs Feature: gene Location: 6695-8014 bp Feature: gene Location: 8044-8247 bp Feature: gene Location: 8531-9346 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8864-9191 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 886 4-9191 bp Feature: gene Location: 9312-9542 bp Feature: gene Location: 9490-10074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs