myRT

myRT report for GCA_009775705.1_ASM977570v1

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Seq: VSQE01000118.1 Prevotellamassilia sp. isolate SC1164_S17_bin.5 SC1164_S17_SC1164_S17_bin.5_contig_118, whole genome shotgun sequence (3602 bp)
Overview 1 RT 1: 234-3136 bp Neighborhood of RT #1 [234, 3510] HNH_2 RVT_N RVT-GII YkfC Feature: gene Location: 234-1073 bp Feature: domain Description: HNH_2 Location: 756-909 bp Feature: domain Description: HNH_2 Location: 756-909 bp Feature: gene Location: 1431-1565 bp Feature: gene Location: 1843-3510 bp Feature: RT Description: RVT_N Location: 1897-2140 bp Feature: RT Description: RVT_N Location: 1 897-21 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2185-2833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 85-2833 bp Feature: domain Description: YkfC Location: 3001-3136 bp Feature: domain Description: YkfC Location: 3001 -31 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH_2 (pfam13391)

Seq: VSQE01000018.1 Prevotellamassilia sp. isolate SC1164_S17_bin.5 SC1164_S17_SC1164_S17_bin.5_contig_18, whole genome shotgun sequence (34343 bp)
Overview 1 RT 1: 25674-31721 bp Neighborhood of RT #1 [25674, 31753] Avd_like Fib_succ_major RVT-DGRs Porin_10 PRK07568 Feature: gene Location: 25674-26162 bp Feature: gene Location: 26152-26571 bp Feature: domain Description: Avd_like Location: 26248-26554 bp Feature: domain Description: Avd_like Location: 2 62 48-2 6554 bp Feature: gene Location: 26649-28202 bp Feature: domain Description: Fib_succ_major Location: 26688-26940 bp Feature: domain Description: Fib_succ_major Location: 2 6688-2 6940 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27195-27945 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 7195-2 7945 bp Feature: gene Location: 28330-30474 bp Feature: domain Description: Porin_10 Location: 28492-30472 bp Feature: domain Description: Porin_10 Location: 2 8492 -30472 bp Feature: gene Location: 30533-31753 bp Feature: domain Description: PRK07568 Location: 30542-31721 bp Feature: domain Description: PRK07568 Location: 30542 -3172 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Fib_succ_major (TIGR02145), RVT-DGRs, Porin_10 (pfam14121), PRK07568 (pyridoxal phosphate-dependent aminotransferase)

Seq: VSQE01000009.1 Prevotellamassilia sp. isolate SC1164_S17_bin.5 SC1164_S17_SC1164_S17_bin.5_contig_9, whole genome shotgun sequence (42106 bp)
Overview 1 RT 1: 28626-31768 bp Neighborhood of RT #1 [28626, 31785] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 28626-28922 bp Feature: domain Description: DUF4133 Location: 28668-28845 bp Feature: domain Description: DUF413 3 Location: 28668-28845 bp Feature: gene Location: 28935-29129 bp Feature: domain Description: DUF4134 Location: 29025-29115 bp Feature: domain Description: DUF413 4 Location: 29025-29115 bp Feature: gene Location: 29154-30965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29418-30240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29418-3 0240 bp Feature: domain Description: Intron_maturas2 Location: 30429-30639 bp Feature: domain Description: Intron_maturas2 Location: 3 0429-3 063 9 bp Feature: domain Description: HNHc Note: nucleases Location: 30789-30894 bp Feature: domain Description: HNHc Note: nucleases Location: 3 0789-3 0894 bp Feature: gene Location: 31256-31495 bp Feature: gene Location: 31507-31785 bp Feature: domain Description: DUF4134 Location: 31567-31768 bp Feature: domain Description: DUF413 4 Location: 3 1567-3 1768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)