myRT

myRT report for GCA_009781235.1_ASM978123v1

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Seq: WQYM01000056.1 Firmicutes bacterium isolate Emb289P3bin92 Ga0123356_10004609, whole genome shotgun sequence (14197 bp)
Overview 1 RT 1: 1-4586 bp Neighborhood of RT #1 [1, 4687] RVT-DGRs Snf7 ruvB NERD Flg_new Feature: gene Location: 1-189 bp Feature: gene Location: 301-1365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 499-1153 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 499-1 1 53 bp Feature: gene Location: 1480-3726 bp Feature: domain Description: Snf7 Location: 1504-1945 bp Feature: domain Description: Snf7 Location: 1 504-1 945 bp Feature: domain Description: ruvB Location: 2158-3094 bp Feature: domain Description: ruvB Location: 21 58-3094 bp Feature: domain Description: NERD Location: 3187-3475 bp Feature: domain Description: NERD Location: 31 87-3475 bp Feature: gene Location: 4130-4687 bp Feature: domain Description: Flg_new Location: 4382-4586 bp Feature: domain Description: Flg_new Location: 4382-4586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Snf7 (pfam03357), ruvB (TIGR00635), NERD (pfam08378), RVT-DGRs

Seq: WQYM01000062.1 Firmicutes bacterium isolate Emb289P3bin92 Ga0123356_10005137, whole genome shotgun sequence (13410 bp)
Overview 1 RT 1: 1142-8380 bp Neighborhood of RT #1 [1142, 8436] HTH_XRE Cupin_2 MACS_AAE_MA_like Mrp RVT-Retrons MATE_SpoVB_like MATE_SpoVB_like cysteine_hydrolases Feature: gene Location: 1142-3427 bp Feature: domain Description: HTH_XRE Location: 1199-1367 bp Feature: domain Description: HTH_XRE Location: 1199-1367 bp Feature: domain Description: Cupin_2 Location: 1553-1721 bp Feature: domain Description: Cupin_2 Location: 1553-172 1 bp Feature: domain Description: MACS_AAE_MA_like Location: 1856-3419 bp Feature: domain Description: MACS_AAE_MA_like Location: 1856-3419 bp Feature: gene Location: 3692-4492 bp Feature: domain Description: Mrp Location: 3710-3980 bp Feature: domain Description: Mrp Location: 3710-3980 bp Feature: gene Location: 4671-5513 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4758-5286 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4758-52 86 bp Feature: gene Location: 5578-7734 bp Feature: domain Description: MATE_SpoVB_like Location: 5803-6418 bp Feature: domain Description: MATE_SpoVB_like Location: 5803-6418 bp Feature: domain Description: MATE_SpoVB_like Location: 6631-7441 bp Feature: domain Description: MATE_SpoVB_like Location: 6631-7441 bp Feature: gene Location: 7792-8436 bp Feature: domain Description: cysteine_hydrolases Location: 7909-8380 bp Feature: domain Description: cysteine_hydrolases Location: 7909-8380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Cupin_2 (pfam07883), MACS_AAE_MA_like (cd05970), Mrp (COG0489), RVT-Retrons, MATE_SpoVB_like (cd13124), cysteine_hydrolases (cl00220)

Seq: WQYM01000070.1 Firmicutes bacterium isolate Emb289P3bin92 Ga0123356_10005522, whole genome shotgun sequence (12864 bp)
Overview 1 RT 1: 7664-10323 bp Neighborhood of RT #1 [7664, 10616] RVT-Retrons E1_enzyme_family Feature: gene Location: 7664-7837 bp Feature: gene Location: 7988-8143 bp Feature: gene Location: 8469-9629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8739-9342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 873 9-93 42 bp Feature: gene Location: 9714-9932 bp Feature: gene Location: 9942-10616 bp Feature: domain Description: E1_enzyme_family Location: 9996-10323 bp Feature: domain Description: E1_enzyme_family Location: 9996-103 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, E1_enzyme_family (cl22428)

Seq: WQYM01000071.1 Firmicutes bacterium isolate Emb289P3bin92 Ga0123356_10005765, whole genome shotgun sequence (12570 bp)
Overview 1 RT 1: 176-4685 bp Neighborhood of RT #1 [176, 4685] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 176-313 bp Feature: gene Location: 605-2404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1685 bp Feature: domain Description: Intron_maturas2 Location: 1766-2096 bp Feature: domain Description: Intron_maturas2 Location: 1766-2096 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-2378 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-2378 bp Feature: gene Location: 2578-3714 bp Feature: gene Location: 3855-4685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)