myRT

myRT report for GCA_009789035.1_ASM978903v1

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Seq: VTFE01000050.1 Pseudomonas aeruginosa strain P13 NODE_50_length_34304_cov_34.853615, whole genome shotgun sequence (34304 bp)
Overview 1 RT 1: 13515-19397 bp Neighborhood of RT #1 [13515, 19397] IS5 RVT-GII GIIM RVT_N RVT-GII GIIM IS5 Feature: gene Location: 13515-13643 bp Feature: gene Location: 13808-14347 bp Feature: domain Description: IS5 Location: 13997-14324 bp Feature: domain Description: IS5 Location: 1 3997-1 4324 bp Feature: gene Location: 14840-16108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15053-15710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5053-1 571 0 bp Feature: domain Description: GIIM Note: maturase Location: 15788-16010 bp Feature: domain Description: GIIM Note: maturase Location: 1 5788-1 601 0 bp Feature: gene Location: 16167-16367 bp Feature: gene Location: 16784-18289 bp Feature: RT Description: RVT_N Location: 16865-17090 bp Feature: RT Description: RVT_N Location: 1 6865-1 7090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17141-17783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 41 -1 7783 bp Feature: domain Description: GIIM Note: maturase Location: 17834-18068 bp Feature: domain Description: GIIM Note: maturase Location: 1 7834-1 8068 bp Feature: gene Location: 18410-18820 bp Feature: domain Description: IS5 Location: 18416-18794 bp Feature: domain Description: IS5 Location: 1 841 6-1 8794 bp Feature: gene Location: 19209-19397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: VTFE01000006.1 Pseudomonas aeruginosa strain P13 NODE_6_length_279350_cov_15.241545, whole genome shotgun sequence (279350 bp)
Overview 1 RT 1: 194330-204638 bp 2 RT 2: 220896-229746 bp Neighborhood of RT #1 [194330, 204640] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [220896, 229775] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 194330-195451 bp Feature: domain Description: COG3177 Location: 194348-195440 bp Feature: domain Description: COG3177 Location: 194348-195440 bp Feature: gene Location: 195713-195874 bp Feature: gene Location: 196177-197862 bp Feature: RT Description: RVT_N Location: 196234-196474 bp Feature: RT Description: RVT_N Location: 1962 34-196474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196522-197158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19652 2 -197158 bp Feature: domain Description: GIIM Note: maturase Location: 197212-197443 bp Feature: domain Description: GIIM Note: maturase Location: 1972 12 -197443 bp Feature: domain Description: HNH Note: nucleases Location: 197695-197833 bp Feature: domain Description: HNH Note: nucleases Location: 197695-197833 bp Feature: gene Location: 198943-202680 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199051-199708 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 199051-199708 bp Feature: domain Description: PRK09776 Location: 199921-200392 bp Feature: domain Description: PRK09776 Location: 19992 1-2 00392 bp Feature: domain Description: PAS Location: 200437-200974 bp Feature: domain Description: PAS Location: 2 00437-2 00974 bp Feature: domain Description: PRK10060 Location: 200983-202630 bp Feature: domain Description: PRK10060 Location: 2 00983-2 02 630 bp Feature: gene Location: 202787-204640 bp Feature: domain Description: PRK05658 Location: 202799-204638 bp Feature: domain Description: PRK05658 Location: 2 02 799-2 04638 bp Feature: gene Location: 220896-222110 bp Feature: domain Description: PRK10770 Location: 220908-222102 bp Feature: domain Description: PRK10770 Location: 2 2 0908-2 2 2 102 bp Feature: gene Location: 222169-224970 bp Feature: domain Description: LptD Location: 222364-224956 bp Feature: domain Description: LptD Location: 2 2 2 364-2 2 4956 bp Feature: gene Location: 225103-226815 bp Feature: RT Description: RVT_N Location: 225160-225403 bp Feature: RT Description: RVT_N Location: 2 2 5160-2 2 5403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225448-226084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 5448-2 2 6084 bp Feature: domain Description: YkfC Location: 226291-226444 bp Feature: domain Description: YkfC Location: 2 2 62 91-2 2 6444 bp Feature: domain Description: HNH Note: nucleases Location: 226621-226759 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 662 1-2 2 6759 bp Feature: gene Location: 228088-229104 bp Feature: domain Description: COG3178 Location: 228091-229090 bp Feature: domain Description: COG3178 Location: 2 2 8091-2 2 9090 bp Feature: gene Location: 229101-229775 bp Feature: domain Description: NTP_transferase_like_1 Location: 229107-229746 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 2 9107-2 2 9746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)