myRT

myRT report for GCA_009789825.1_ASM978982v1

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Seq: WSUX01000028.1 Escherichia coli strain SH27c NODE_28_length_42951_cov_19.717378, whole genome shotgun sequence (42951 bp)
Overview 1 RT 1: 3918-8209 bp Neighborhood of RT #1 [3918, 8209] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 3918-5180 bp Feature: domain Description: YesM Location: 4431-5172 bp Feature: domain Description: YesM Location: 4431 -51 72 bp Feature: gene Location: 5210-5380 bp Feature: gene Location: 5730-6251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5736-6018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5736-601 8 bp Feature: domain Description: GIIM Note: maturase Location: 6066-6246 bp Feature: domain Description: GIIM Note: maturase Location: 6066-6246 bp Feature: gene Location: 6279-6818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6609-6687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6609-6687 bp Feature: gene Location: 6849-7046 bp Feature: gene Location: 7304-8209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: WSUX01000031.1 Escherichia coli strain SH27c NODE_31_length_38910_cov_21.744218, whole genome shotgun sequence (38910 bp)
Overview 1 RT 1: 37765-38908 bp Neighborhood of RT #1 [37765, 38907] RVT-Retrons Feature: gene Location: 37765-38004 bp Feature: gene Location: 38311-38487 bp Feature: gene Location: 38560-38907 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38719-38908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38719-38908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: WSUX01000045.1 Escherichia coli strain SH27c NODE_45_length_13173_cov_21.106239, whole genome shotgun sequence (13173 bp)
Overview 1 RT 1: 1736-5980 bp Neighborhood of RT #1 [1736, 5980] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1736-2638 bp Feature: domain Description: Macro_Appr_pase Location: 1754-2267 bp Feature: domain Description: Macro_Appr_pase Location: 1754-2267 bp Feature: gene Location: 2647-3231 bp Feature: domain Description: Caudo_TAP Location: 2863-3220 bp Feature: domain Description: Caudo_TAP Location: 2863 -3 220 bp Feature: gene Location: 3344-4714 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3572-4178 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 572-4178 bp Feature: gene Location: 4692-5396 bp Feature: domain Description: SLATT_5 Location: 4854-5364 bp Feature: domain Description: SLATT_5 Location: 4854-53 64 bp Feature: gene Location: 5804-5980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: WSUX01000092.1 Escherichia coli strain SH27c NODE_96_length_1177_cov_5.079924, whole genome shotgun sequence (1177 bp)
Overview 1 RT 1: 1-406 bp Neighborhood of RT #1 [1, 1176] RVT-Retrons Feature: gene Location: 1-1176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 -4 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons