myRT

myRT report for GCA_009789905.1_ASM978990v1

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Seq: WSVB01000138.1 Escherichia coli strain SH9c NODE_138_length_2770_cov_71.355656, whole genome shotgun sequence (2770 bp)
Overview 1 RT 1: 108-2758 bp Neighborhood of RT #1 [108, 2763] PRK10276 RVT-GII InsA Feature: gene Location: 108-449 bp Feature: domain Description: PRK10276 Location: 111-432 bp Feature: domain Description: PRK1 0276 Location: 1 1 1 -432 bp Feature: gene Location: 677-844 bp Feature: gene Location: 850-2337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255-1945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 255-1 945 bp Feature: gene Location: 2488-2763 bp Feature: domain Description: InsA Location: 2491-2758 bp Feature: domain Description: InsA Location: 2491 -2758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-GII

Seq: WSVB01000168.1 Escherichia coli strain SH9c NODE_171_length_1306_cov_195.553859, whole genome shotgun sequence (1306 bp)
Overview 1 RT 1: 3-1303 bp Neighborhood of RT #1 [3, 1303] RVT-GII Feature: gene Location: 3-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76-651 bp Feature: gene Location: 944-1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSVB01000210.1 Escherichia coli strain SH9c NODE_225_length_453_cov_145.699387, whole genome shotgun sequence (453 bp)
Overview 1 RT 1: 2-284 bp Neighborhood of RT #1 [2, 451] RVT-GII Feature: gene Location: 2-451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSVB01000230.1 Escherichia coli strain SH9c NODE_247_length_326_cov_106.628141, whole genome shotgun sequence (326 bp)
Overview 1 RT 1: 3-219 bp Neighborhood of RT #1 [3, 323] RVT-GII Feature: gene Location: 3-323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSVB01000231.1 Escherichia coli strain SH9c NODE_248_length_326_cov_68.130653, whole genome shotgun sequence (326 bp)
Overview 1 RT 1: 3-243 bp Neighborhood of RT #1 [3, 323] RVT-GII Feature: gene Location: 3-323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSVB01000087.1 Escherichia coli strain SH9c NODE_87_length_11290_cov_8.387620, whole genome shotgun sequence (11290 bp)
Overview 1 RT 1: 845-8110 bp Neighborhood of RT #1 [845, 8110] TIGR02646 COG3950 RVT-Retrons SSL2 Feature: gene Location: 845-1495 bp Feature: domain Description: TIGR02646 Location: 911-1316 bp Feature: domain Description: TIGR026 46 Location: 911-1316 bp Feature: gene Location: 1498-3150 bp Feature: domain Description: COG3950 Location: 1696-3112 bp Feature: domain Description: COG3950 Location: 16 96 -3112 bp Feature: gene Location: 3147-4082 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3249-3849 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3249-3849 bp Feature: gene Location: 4811-7801 bp Feature: domain Description: SSL2 Location: 4967-5945 bp Feature: domain Description: SSL2 Location: 496 7-5945 bp Feature: gene Location: 7946-8110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061)