myRT

myRT report for GCA_009789925.1_ASM978992v1

Download annotations/find similar RTs

Seq: WSVC01000028.1 Escherichia coli strain SH8c NODE_28_length_50506_cov_22.613291, whole genome shotgun sequence (50506 bp)
Overview 1 RT 1: 11473-15764 bp Neighborhood of RT #1 [11473, 15764] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 11473-12735 bp Feature: domain Description: YesM Location: 11986-12727 bp Feature: domain Description: YesM Location: 1 1 986-1 2727 bp Feature: gene Location: 12765-12935 bp Feature: gene Location: 13285-13806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13291-13573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3291 -1 3573 bp Feature: domain Description: GIIM Note: maturase Location: 13621-13801 bp Feature: domain Description: GIIM Note: maturase Location: 1 3621 -1 3801 bp Feature: gene Location: 13834-14373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14164-14242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 64-1 4242 bp Feature: gene Location: 14404-14601 bp Feature: gene Location: 14859-15764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: WSVC01000030.1 Escherichia coli strain SH8c NODE_30_length_42041_cov_21.541132, whole genome shotgun sequence (42041 bp)
Overview 1 RT 1: 1-1881 bp Neighborhood of RT #1 [1, 1881] RVT-Retrons Feature: gene Location: 1-1086 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160-778 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160-778 bp Feature: gene Location: 1307-1450 bp Feature: gene Location: 1642-1881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: WSVC01000072.1 Escherichia coli strain SH8c NODE_72_length_4250_cov_22.387097, whole genome shotgun sequence (4250 bp)
Overview 1 RT 1: 44-2144 bp Neighborhood of RT #1 [44, 2515] RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 44-907 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 50-371 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 50-3 71 bp Feature: gene Location: 1020-1604 bp Feature: domain Description: Caudo_TAP Location: 1236-1593 bp Feature: domain Description: Caudo_TAP Location: 123 6-1593 bp Feature: gene Location: 1613-2515 bp Feature: domain Description: Macro_Appr_pase Location: 1631-2144 bp Feature: domain Description: Macro_Appr_pase Location: 163 1-2144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)