myRT

myRT report for GCA_009790035.1_ASM979003v1

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Seq: WSVG01000030.1 Escherichia coli strain R27c NODE_30_length_36520_cov_23.303520, whole genome shotgun sequence (36520 bp)
Overview 1 RT 1: 24230-27973 bp Neighborhood of RT #1 [24230, 27984] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 24230-24712 bp Feature: domain Description: SmpB Location: 24260-24707 bp Feature: domain Description: SmpB Location: 24260-24707 bp Feature: gene Location: 24846-25013 bp Feature: gene Location: 25398-26171 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25533-25986 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 25533-25986 bp Feature: gene Location: 26575-26793 bp Feature: domain Description: PRK09678 Location: 26578-26776 bp Feature: domain Description: PRK09678 Location: 26578-26776 bp Feature: gene Location: 26884-27984 bp Feature: domain Description: D Location: 26890-27973 bp Feature: domain Description: D Location: 26890-27973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: WSVG01000056.1 Escherichia coli strain R27c NODE_56_length_7470_cov_36.239276, whole genome shotgun sequence (7470 bp)
Overview 1 RT 1: 4059-6789 bp Neighborhood of RT #1 [4059, 6884] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4059-4292 bp Feature: domain Description: DUF905 Location: 4089-4287 bp Feature: domain Description: DUF905 Location: 4089-42 87 bp Feature: gene Location: 4348-4788 bp Feature: domain Description: PRK13732 Location: 4354-4786 bp Feature: domain Description: PRK13732 Location: 4354-4786 bp Feature: gene Location: 4983-6884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5250-6081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 50-6081 bp Feature: domain Description: Intron_maturas2 Location: 6195-6453 bp Feature: domain Description: Intron_maturas2 Location: 6195-6453 bp Feature: domain Description: HNHc Note: nucleases Location: 6627-6789 bp Feature: domain Description: HNHc Note: nucleases Location: 662 7-6789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)