myRT

myRT report for GCA_009790715.1_ASM979071v1

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Seq: WSWN01000144.1 Escherichia coli strain IM36c NODE_144_length_7040_cov_1.600752, whole genome shotgun sequence (7040 bp)
Overview 1 RT 1: 1305-7022 bp Neighborhood of RT #1 [1305, 7039] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 1305-2558 bp Feature: domain Description: proA Location: 1332-2523 bp Feature: domain Description: proA Location: 1 332-2523 bp Feature: gene Location: 2913-4097 bp Feature: domain Description: PRK09692 Location: 2919-4074 bp Feature: domain Description: PRK09692 Location: 291 9-4074 bp Feature: gene Location: 4090-5718 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4498-4927 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4498-4927 bp Feature: gene Location: 5715-6455 bp Feature: gene Location: 6758-7039 bp Feature: domain Description: Psu Location: 6761-7022 bp Feature: domain Description: Psu Location: 6761 -7022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: WSWN01000166.1 Escherichia coli strain IM36c NODE_166_length_4171_cov_1.743571, whole genome shotgun sequence (4171 bp)
Overview 1 RT 1: 59-3400 bp Neighborhood of RT #1 [59, 3400] RVT-GII GIIM HTH_28 Feature: gene Location: 59-580 bp Feature: gene Location: 1000-2388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330-1948 bp Feature: domain Description: GIIM Note: maturase Location: 1996-2227 bp Feature: domain Description: GIIM Note: maturase Location: 1996-2 2 2 7 bp Feature: gene Location: 2698-2964 bp Feature: domain Description: HTH_28 Location: 2719-2842 bp Feature: domain Description: HTH_2 8 Location: 2 719-2 842 bp Feature: gene Location: 3146-3400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_28 (pfam13518)

Seq: WSWN01000185.1 Escherichia coli strain IM36c NODE_185_length_2503_cov_6.586279, whole genome shotgun sequence (2503 bp)
Overview 1 RT 1: 1-2062 bp Neighborhood of RT #1 [1, 2307] PHA02517 RVT-GII GIIM Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)