myRT

myRT report for GCA_009790815.1_ASM979081v1

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Seq: WSWT01000100.1 Escherichia coli strain IM22c NODE_100_length_17933_cov_1.432326, whole genome shotgun sequence (17933 bp)
Overview 1 RT 1: 14857-17846 bp Neighborhood of RT #1 [14857, 17846] RVT-GII RVT-GII GIIM Feature: gene Location: 14857-15762 bp Feature: gene Location: 15900-16091 bp Feature: gene Location: 16248-16787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16578-16656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6578-1 6656 bp Feature: gene Location: 16815-17336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16821-17103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6821 -1 71 03 bp Feature: domain Description: GIIM Note: maturase Location: 17151-17331 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 51 -1 7331 bp Feature: gene Location: 17658-17846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WSWT01000138.1 Escherichia coli strain IM22c NODE_138_length_13107_cov_1.344453, whole genome shotgun sequence (13107 bp)
Overview 1 RT 1: 6434-12465 bp Neighborhood of RT #1 [6434, 12465] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 6434-7354 bp Feature: domain Description: AbiEii Location: 6476-7217 bp Feature: domain Description: AbiEii Location: 6476-72 17 bp Feature: gene Location: 7341-8144 bp Feature: domain Description: AbiEi_3_N Location: 7374-7635 bp Feature: domain Description: AbiEi_3_N Location: 7374-7635 bp Feature: domain Description: AbiEi_3 Location: 7647-8103 bp Feature: domain Description: AbiEi_3 Location: 7647-8103 bp Feature: gene Location: 8439-11648 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8967-9456 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8967-9456 bp Feature: domain Description: nitrilase Location: 10962-11559 bp Feature: domain Description: nitrilase Location: 10962 -11559 bp Feature: gene Location: 11809-11949 bp Feature: domain Description: Phage_ASH Location: 11836-11929 bp Feature: domain Description: Phage_ASH Location: 11836-1192 9 bp Feature: gene Location: 11995-12465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: WSWT01000146.1 Escherichia coli strain IM22c NODE_146_length_12050_cov_1.218318, whole genome shotgun sequence (12050 bp)
Overview 1 RT 1: 88-3727 bp Neighborhood of RT #1 [88, 3894] InsE RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 88-390 bp Feature: domain Description: InsE Location: 127-376 bp Feature: domain Description: InsE Location: 127-3 76 bp Feature: gene Location: 539-832 bp Feature: gene Location: 1463-2986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 6-2468 bp Feature: domain Description: GIIM Note: maturase Location: 2543-2741 bp Feature: domain Description: GIIM Note: maturase Location: 2543 -2741 bp Feature: gene Location: 3139-3315 bp Feature: domain Description: PHA02517 Location: 3142-3244 bp Feature: domain Description: PHA02517 Location: 3 142-3 244 bp Feature: gene Location: 3481-3894 bp Feature: domain Description: COG2085 Location: 3580-3727 bp Feature: domain Description: COG2085 Location: 3 580-3 727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: WSWT01000150.1 Escherichia coli strain IM22c NODE_150_length_11712_cov_2.284333, whole genome shotgun sequence (11712 bp)
Overview 1 RT 1: 8266-11616 bp Neighborhood of RT #1 [8266, 11648] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 8266-8913 bp Feature: domain Description: PinE Location: 8359-8908 bp Feature: domain Description: PinE Location: 8359-8908 bp Feature: gene Location: 9013-9414 bp Feature: gene Location: 9623-10975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9944-10562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994 4 -10562 bp Feature: domain Description: GIIM Note: maturase Location: 10610-10841 bp Feature: domain Description: GIIM Note: maturase Location: 10610-1084 1 bp Feature: gene Location: 11046-11396 bp Feature: gene Location: 11451-11648 bp Feature: domain Description: PRK09413 Location: 11454-11616 bp Feature: domain Description: PRK094 13 Location: 114 54 -11616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)