myRT

myRT report for GCA_009791115.1_ASM979111v1

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Seq: WSXH01000219.1 Escherichia coli strain IH30c NODE_219_length_1131_cov_84.312749, whole genome shotgun sequence (1131 bp)
Overview 1 RT 1: 2-962 bp Neighborhood of RT #1 [2, 1129] RVT-GII Feature: gene Location: 2-1129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230-962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSXH01000082.1 Escherichia coli strain IH30c NODE_82_length_17658_cov_52.340254, whole genome shotgun sequence (17658 bp)
Overview 1 RT 1: 12711-16793 bp Neighborhood of RT #1 [12711, 16930] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 12711-13142 bp Feature: domain Description: PRK10276 Location: 12762-13125 bp Feature: domain Description: PRK102 76 Location: 12 762 -1312 5 bp Feature: gene Location: 13265-13498 bp Feature: gene Location: 13549-15036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13954-14644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13954-14644 bp Feature: gene Location: 15285-16256 bp Feature: domain Description: StbA Location: 15288-16233 bp Feature: domain Description: StbA Location: 152 88-162 33 bp Feature: gene Location: 16259-16930 bp Feature: domain Description: Plasmid_stab_B Location: 16274-16481 bp Feature: domain Description: Plasmid_stab_B Location: 162 74-16481 bp Feature: domain Description: Plasmid_stab_B Location: 16586-16793 bp Feature: domain Description: Plasmid_stab_B Location: 16586-16793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: WSXH01000095.1 Escherichia coli strain IH30c NODE_95_length_11345_cov_13.214298, whole genome shotgun sequence (11345 bp)
Overview 1 RT 1: 900-8165 bp Neighborhood of RT #1 [900, 8165] TIGR02646 COG3950 RVT-Retrons SSL2 Feature: gene Location: 900-1550 bp Feature: domain Description: TIGR02646 Location: 966-1371 bp Feature: domain Description: TIGR02646 Location: 966-13 71 bp Feature: gene Location: 1553-3205 bp Feature: domain Description: COG3950 Location: 1751-3167 bp Feature: domain Description: COG3 950 Location: 1751-3 167 bp Feature: gene Location: 3202-4137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3304-3904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 3 04-3 904 bp Feature: gene Location: 4866-7856 bp Feature: domain Description: SSL2 Location: 5022-6000 bp Feature: domain Description: SSL2 Location: 5022-6000 bp Feature: gene Location: 8001-8165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061)