myRT

myRT report for GCA_009791155.1_ASM979115v1

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Seq: WSXJ01000109.1 Escherichia coli strain IH27c NODE_109_length_12494_cov_18.486779, whole genome shotgun sequence (12494 bp)
Overview 1 RT 1: 9057-12088 bp Neighborhood of RT #1 [9057, 12088] PRK10276 RVT-GII DDE_Tnp_IS1 Rep_3 Feature: gene Location: 9057-9482 bp Feature: domain Description: PRK10276 Location: 9060-9468 bp Feature: domain Description: PRK1 0276 Location: 9060-9468 bp Feature: gene Location: 9635-9886 bp Feature: gene Location: 9961-11457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10288-10978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0288-1 0978 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11131-11455 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 1 1 31 -1 1 455 bp Feature: gene Location: 11638-11775 bp Feature: domain Description: Rep_3 Location: 11641-11737 bp Feature: domain Description: Rep_3 Location: 1 1 641 -1 1 737 bp Feature: gene Location: 11804-12088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: WSXJ01000115.1 Escherichia coli strain IH27c NODE_115_length_11345_cov_9.670530, whole genome shotgun sequence (11345 bp)
Overview 1 RT 1: 900-8165 bp Neighborhood of RT #1 [900, 8165] TIGR02646 COG3950 RVT-Retrons SSL2 Feature: gene Location: 900-1550 bp Feature: domain Description: TIGR02646 Location: 966-1371 bp Feature: domain Description: TIGR02 646 Location: 966-1371 bp Feature: gene Location: 1553-3205 bp Feature: domain Description: COG3950 Location: 1751-3167 bp Feature: domain Description: COG3950 Location: 1751-3167 bp Feature: gene Location: 3202-4137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3304-3904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3304-3904 bp Feature: gene Location: 4866-7856 bp Feature: domain Description: SSL2 Location: 5022-6000 bp Feature: domain Description: SSL2 Location: 502 2 -6000 bp Feature: gene Location: 8001-8165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061)

Seq: WSXJ01000184.1 Escherichia coli strain IH27c NODE_184_length_2790_cov_31.885468, whole genome shotgun sequence (2790 bp)
Overview 1 RT 1: 161-2543 bp Neighborhood of RT #1 [161, 2788] DDE_Tnp_Tn3 PHA02517 RVT-GII GIIM Feature: gene Location: 161-1096 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 164-1016 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 164-1016 bp Feature: gene Location: 1227-1673 bp Feature: domain Description: PHA02517 Location: 1230-1671 bp Feature: domain Description: PHA02517 Location: 123 0-1671 bp Feature: gene Location: 1790-2788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793-2270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793 -2270 bp Feature: domain Description: GIIM Note: maturase Location: 2345-2543 bp Feature: domain Description: GIIM Note: maturase Location: 23 45-2543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)

Seq: WSXJ01000235.1 Escherichia coli strain IH27c NODE_235_length_1306_cov_61.687023, whole genome shotgun sequence (1306 bp)
Overview 1 RT 1: 1-1305 bp Neighborhood of RT #1 [1, 1304] RVT-GII Feature: gene Location: 1-363 bp Feature: gene Location: 657-1304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII