myRT

myRT report for GCA_009791245.1_ASM979124v1

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Seq: WSXN01000105.1 Escherichia coli strain IH8c NODE_105_length_9312_cov_11.698312, whole genome shotgun sequence (9312 bp)
Overview 1 RT 1: 3490-8960 bp Neighborhood of RT #1 [3490, 9106] SSL2 RVT-Retrons COG3950 Feature: gene Location: 3490-6480 bp Feature: domain Description: SSL2 Location: 3646-4624 bp Feature: domain Description: SSL2 Location: 3646-4624 bp Feature: gene Location: 6713-6913 bp Feature: gene Location: 7209-8144 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7311-7911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 731 1 -791 1 bp Feature: gene Location: 8141-9106 bp Feature: domain Description: COG3950 Location: 8339-8960 bp Feature: domain Description: COG3950 Location: 8339-8960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence )

Seq: WSXN01000166.1 Escherichia coli strain IH8c NODE_166_length_2790_cov_31.950807, whole genome shotgun sequence (2790 bp)
Overview 1 RT 1: 3-2550 bp Neighborhood of RT #1 [3, 2630] RVT-GII GIIM PHA02517 DDE_Tnp_Tn3 Feature: gene Location: 3-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-483 bp Feature: domain Description: GIIM Note: maturase Location: 558-756 bp Feature: domain Description: GIIM Note: maturase Location: 558-756 bp Feature: gene Location: 1178-1564 bp Feature: domain Description: PHA02517 Location: 1181-1562 bp Feature: domain Description: PHA02 517 Location: 1181-1562 bp Feature: gene Location: 1695-2630 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1698-2550 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1698-2 550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)

Seq: WSXN01000218.1 Escherichia coli strain IH8c NODE_218_length_1306_cov_99.068702, whole genome shotgun sequence (1306 bp)
Overview 1 RT 1: 3-1303 bp Neighborhood of RT #1 [3, 1303] RVT-GII Feature: gene Location: 3-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-651 bp Feature: gene Location: 944-1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII