myRT

myRT report for GCA_009791355.1_ASM979135v1

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Seq: WSYN01000003.1 Pseudomonas aeruginosa strain PA-50010278 NODE_3_length_429122_cov_45.851215, whole genome shotgun sequence (429122 bp)
Overview 1 RT 1: 332144-342452 bp 2 RT 2: 358711-367560 bp Neighborhood of RT #1 [332144, 342454] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [358711, 367589] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 332144-333265 bp Feature: domain Description: COG3177 Location: 332162-333254 bp Feature: domain Description: COG31 77 Location: 3321 62-333254 bp Feature: gene Location: 333527-333688 bp Feature: gene Location: 333991-335676 bp Feature: RT Description: RVT_N Location: 334048-334288 bp Feature: RT Description: RVT_N Location: 334048-334288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334336-334972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334336-334972 bp Feature: domain Description: GIIM Note: maturase Location: 335026-335257 bp Feature: domain Description: GIIM Note: maturase Location: 335026-335257 bp Feature: domain Description: HNH Note: nucleases Location: 335509-335647 bp Feature: domain Description: HNH Note: nucleases Location: 335509-335647 bp Feature: gene Location: 336757-340494 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 336865-337522 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 336865-337522 bp Feature: domain Description: PRK09776 Location: 337735-338206 bp Feature: domain Description: PRK09776 Location: 337735-338206 bp Feature: domain Description: PAS Location: 338263-338788 bp Feature: domain Description: PAS Location: 338263-338788 bp Feature: domain Description: PRK10060 Location: 338797-340444 bp Feature: domain Description: PRK1 0060 Location: 338797-340444 bp Feature: gene Location: 340601-342454 bp Feature: domain Description: PRK05658 Location: 340613-342452 bp Feature: domain Description: PRK05658 Location: 34061 3-342452 bp Feature: gene Location: 358711-359925 bp Feature: domain Description: PRK10770 Location: 358723-359917 bp Feature: domain Description: PRK1 0770 Location: 358723-35991 7 bp Feature: gene Location: 359984-362785 bp Feature: domain Description: LptD Location: 360179-362771 bp Feature: domain Description: LptD Location: 3601 79-362771 bp Feature: gene Location: 362918-364630 bp Feature: RT Description: RVT_N Location: 362975-363218 bp Feature: RT Description: RVT_N Location: 362975-36321 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363263-363899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363263-363899 bp Feature: domain Description: YkfC Location: 364109-364259 bp Feature: domain Description: YkfC Location: 3641 09-364259 bp Feature: domain Description: HNH Note: nucleases Location: 364436-364574 bp Feature: domain Description: HNH Note: nucleases Location: 364436-364574 bp Feature: gene Location: 365902-366918 bp Feature: domain Description: COG3178 Location: 365905-366904 bp Feature: domain Description: COG31 78 Location: 365905-366904 bp Feature: gene Location: 366915-367589 bp Feature: domain Description: NTP_transferase_like_1 Location: 366921-367560 bp Feature: domain Description: NTP_transferase_like_1 Location: 366921 -367560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)