myRT

myRT report for GCA_009794105.1_ASM979410v1

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Seq: WTMW01000183.1 Escherichia coli strain 10432wH6 NODE_219_length_5992_cov_16.8786, whole genome shotgun sequence (5992 bp)
Overview 1 RT 1: 2-5871 bp Neighborhood of RT #1 [2, 5990] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 2-253 bp Feature: domain Description: prfC Location: 20-254 bp Feature: domain Description: prfC Location: 20-254 bp Feature: gene Location: 473-733 bp Feature: domain Description: PRK10597 Location: 476-716 bp Feature: domain Description: PRK1 0597 Location: 476-71 6 bp Feature: gene Location: 1093-2697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1384-1975 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 384-1 975 bp Feature: domain Description: TIR_2 Location: 2302-2590 bp Feature: domain Description: TIR_2 Location: 2302-2590 bp Feature: gene Location: 3142-3726 bp Feature: domain Description: Caudo_TAP Location: 3358-3715 bp Feature: domain Description: Caudo_TAP Location: 3358-371 5 bp Feature: gene Location: 3726-5990 bp Feature: domain Description: Phage_fiber_2 Location: 4029-4149 bp Feature: domain Description: Phage_fiber_2 Location: 4029-41 49 bp Feature: domain Description: Collar Location: 5361-5499 bp Feature: domain Description: Collar Location: 5361 -5499 bp Feature: domain Description: Phage_fiber Location: 5550-5589 bp Feature: domain Description: Phage_fiber Location: 5550-5589 bp Feature: domain Description: Phage_fiber Location: 5646-5685 bp Feature: domain Description: Phage_fiber Location: 5646-5685 bp Feature: domain Description: Phage_fiber Location: 5691-5718 bp Feature: domain Description: Phage_fiber Location: 5691 -571 8 bp Feature: domain Description: Phage_fiber Location: 5793-5832 bp Feature: domain Description: Phage_fiber Location: 5793-5832 bp Feature: domain Description: Phage_fiber Location: 5838-5871 bp Feature: domain Description: Phage_fiber Location: 5838-5871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), prfC (TIGR00503), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: WTMW01000017.1 Escherichia coli strain 10432wH6 NODE_31_length_16532_cov_6.35081, whole genome shotgun sequence (16532 bp)
Overview 1 RT 1: 2-2770 bp Neighborhood of RT #1 [2, 2835] RVT-GII GIIM PHA02517 Feature: gene Location: 2-208 bp Feature: gene Location: 295-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1300 bp Feature: domain Description: GIIM Note: maturase Location: 1375-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1375-1573 bp Feature: gene Location: 1772-2197 bp Feature: gene Location: 2410-2835 bp Feature: domain Description: PHA02517 Location: 2434-2770 bp Feature: domain Description: PHA02 517 Location: 2 434-2 770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)