myRT

myRT report for GCA_009795695.2_ASM979569v2

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Seq: CP049891.1 Klebsiella pneumoniae strain k9 plasmid pk9, complete sequence (324283 bp)
Overview 1 RT 1: 21235-23517 bp 2 RT 2: 27478-30649 bp 3 RT 3: 241655-245494 bp 4 RT 4: 313196-317299 bp 5 RT 5: 319980-322056 bp Neighborhood of RT #1 [21235, 23534] Rve RVT-GII PRK10276 Neighborhood of RT #2 [27478, 30654] Rve RVT-GII ArdC Neighborhood of RT #3 [241655, 245514] INT_Cre_C RVT-GII HHA Neighborhood of RT #4 [313196, 317307] Rve RVT-GII umuC Neighborhood of RT #5 [319980, 322056] Rve RVT-GII group_II_RT_mat Feature: gene Location: 21235-21804 bp Feature: domain Description: Rve Location: 21238-21787 bp Feature: domain Description: Rve Location: 21 238-21 787 bp Feature: gene Location: 21809-21940 bp Feature: gene Location: 21974-22396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22079-22379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22079-22379 bp Feature: gene Location: 22400-22666 bp Feature: gene Location: 22722-23534 bp Feature: domain Description: PRK10276 Location: 23154-23517 bp Feature: domain Description: PRK1 0276 Location: 231 54-2351 7 bp Feature: gene Location: 27478-27657 bp Feature: gene Location: 27663-28379 bp Feature: domain Description: Rve Location: 27678-28323 bp Feature: domain Description: Rve Location: 27678-28323 bp Feature: gene Location: 27840-29219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28422-28827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28422-28827 bp Feature: gene Location: 29288-29557 bp Feature: gene Location: 29689-30654 bp Feature: domain Description: ArdC Location: 29815-30649 bp Feature: domain Description: ArdC Location: 2981 5-30649 bp Feature: gene Location: 241655-241972 bp Feature: gene Location: 242038-243174 bp Feature: domain Description: INT_Cre_C Location: 242461-243115 bp Feature: domain Description: INT_Cre_C Location: 242461 -2431 1 5 bp Feature: gene Location: 243260-244747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243665-244355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243665-244355 bp Feature: gene Location: 244798-245031 bp Feature: gene Location: 245260-245514 bp Feature: domain Description: HHA Location: 245311-245494 bp Feature: domain Description: HHA Location: 24531 1 -245494 bp Feature: gene Location: 313196-313510 bp Feature: gene Location: 313739-314308 bp Feature: domain Description: Rve Location: 313742-314291 bp Feature: domain Description: Rve Location: 31 3742-31 4291 bp Feature: gene Location: 314380-315300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314884-315187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 4884-31 51 87 bp Feature: gene Location: 315530-316006 bp Feature: gene Location: 316036-317307 bp Feature: domain Description: umuC Location: 316039-317299 bp Feature: domain Description: umuC Location: 31 6039-31 7299 bp Feature: gene Location: 319980-320159 bp Feature: gene Location: 320165-320908 bp Feature: domain Description: Rve Location: 320207-320852 bp Feature: domain Description: Rve Location: 320207-320852 bp Feature: gene Location: 320949-321365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320976-321249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320976-321 249 bp Feature: gene Location: 321389-321718 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 321395-321584 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 321 395-321 584 bp Feature: gene Location: 321787-322056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), ArdC (COG4227), INT_Cre_C (cd00799), HHA (pfam05321), umuC (PRK03609), group_II_RT_mat (TIGR04416)

Seq: WTCT01000407.1 Klebsiella pneumoniae strain k9 NODE_464_length_1841_cov_99.316132, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 85-1464 bp Neighborhood of RT #1 [85, 1856] RVT-GII Feature: gene Location: 85-318 bp Feature: gene Location: 372-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WTCT01000048.1 Klebsiella pneumoniae strain k9 NODE_56_length_5694_cov_47.905689, whole genome shotgun sequence (5768 bp)
Overview 1 RT 1: 2880-5696 bp Neighborhood of RT #1 [2880, 5713] umuC PRK10276 RVT-GII Feature: gene Location: 2880-4151 bp Feature: domain Description: umuC Location: 2883-4143 bp Feature: domain Description: umuC Location: 2883 -4143 bp Feature: gene Location: 4151-4963 bp Feature: domain Description: PRK10276 Location: 4583-4946 bp Feature: domain Description: PRK10276 Location: 4583 -4946 bp Feature: gene Location: 4988-5713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5393-5696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 93 -5696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: WTCT01000063.1 Klebsiella pneumoniae strain k9 NODE_71_length_16081_cov_22.006903, whole genome shotgun sequence (16155 bp)
Overview 1 RT 1: 8583-15451 bp Neighborhood of RT #1 [8583, 15453] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 8583-9311 bp Feature: domain Description: FimC Location: 8631-9294 bp Feature: domain Description: FimC Location: 8631-9294 bp Feature: gene Location: 9358-11952 bp Feature: domain Description: FimD Location: 9400-11941 bp Feature: domain Description: FimD Location: 94 00-1194 1 bp Feature: gene Location: 11952-14030 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12360-12804 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12360-12804 bp Feature: gene Location: 14087-14527 bp Feature: domain Description: Integrase_1 Location: 14093-14309 bp Feature: domain Description: Integrase_1 Location: 14 093-14 309 bp Feature: gene Location: 14788-15453 bp Feature: domain Description: INT_P4_C Location: 14893-15451 bp Feature: domain Description: INT_P4 _C Location: 14 893-154 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: WTCT01000740.1 Klebsiella pneumoniae strain k9 NODE_924_length_1116_cov_30.419355, whole genome shotgun sequence (1190 bp)
Overview 1 RT 1: 3-797 bp Neighborhood of RT #1 [3, 1189] RVT-GII Feature: gene Location: 3-260 bp Feature: gene Location: 329-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392-797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392-797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII