myRT

myRT report for GCA_009797695.1_ASM979769v1

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Seq: WJTD01000001.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (1830655 bp)
Overview 1 RT 1: 1327846-1331095 bp 2 RT 2: 1651753-1658160 bp Neighborhood of RT #1 [1327846, 1331487] YbjK int RVT-GII Neighborhood of RT #2 [1651753, 1658160] AbiH PRK05318 RVT-GII PRK10597 Feature: gene Location: 1327846-1328409 bp Feature: domain Description: YbjK Location: 1327852-1328389 bp Feature: domain Description: YbjK Location: 1 327852-1 328389 bp Feature: gene Location: 1328532-1329584 bp Feature: domain Description: int Location: 1328535-1329534 bp Feature: domain Description: int Location: 1 328535-1 329534 bp Feature: gene Location: 1330000-1331487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330405-1331095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 330405-1 331 095 bp Feature: gene Location: 1651753-1652622 bp Feature: domain Description: AbiH Location: 1651762-1652530 bp Feature: domain Description: AbiH Location: 1 651 762-1 652530 bp Feature: gene Location: 1653861-1655222 bp Feature: domain Description: PRK05318 Location: 1653885-1655184 bp Feature: domain Description: PRK0531 8 Location: 1 653885-1 6551 84 bp Feature: gene Location: 1656059-1657546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1656464-1657154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 656464-1 6571 54 bp Feature: gene Location: 1657625-1657858 bp Feature: domain Description: PRK10597 Location: 1657628-1657853 bp Feature: domain Description: PRK1 0597 Location: 1 657628-1 657853 bp Feature: gene Location: 1657903-1658160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, AbiH (pfam14253), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: WJTD01000011.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (68539 bp)
Overview 1 RT 1: 11620-17427 bp 2 RT 2: 33684-38565 bp Neighborhood of RT #1 [11620, 17957] AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #2 [33684, 38570] YccC PRK10016 RVT-GII dacD Feature: gene Location: 11620-11925 bp Feature: gene Location: 12804-15080 bp Feature: domain Description: AAA_15 Location: 12837-13845 bp Feature: domain Description: AAA_15 Location: 12 837-13845 bp Feature: gene Location: 15195-16295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15378-15906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15378-15906 bp Feature: gene Location: 16548-16784 bp Feature: gene Location: 16854-17957 bp Feature: domain Description: STKc_PknB_like Location: 16986-17427 bp Feature: domain Description: STKc_PknB_like Location: 16986-1742 7 bp Feature: gene Location: 33684-34742 bp Feature: domain Description: YccC Location: 33690-34728 bp Feature: domain Description: YccC Location: 33690-3472 8 bp Feature: gene Location: 34841-35314 bp Feature: domain Description: PRK10016 Location: 34844-35303 bp Feature: domain Description: PRK10016 Location: 34844-35303 bp Feature: gene Location: 35396-36883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35801-36491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35801-36491 bp Feature: gene Location: 36889-37056 bp Feature: gene Location: 37401-38570 bp Feature: domain Description: dacD Location: 37410-38565 bp Feature: domain Description: dacD Location: 37410-38565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397)

Seq: WJTD01000013.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (45040 bp)
Overview 1 RT 1: 22746-27770 bp Neighborhood of RT #1 [22746, 27770] RVT-GII HTH_28 rve Feature: gene Location: 22746-23255 bp Feature: gene Location: 23264-24079 bp Feature: gene Location: 24014-25501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24419-25109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24419-25109 bp Feature: gene Location: 25694-27097 bp Feature: domain Description: HTH_28 Location: 25742-25883 bp Feature: domain Description: HTH_28 Location: 25742-25883 bp Feature: domain Description: rve Location: 26123-26489 bp Feature: domain Description: rve Location: 26123 -26489 bp Feature: gene Location: 27126-27770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), rve (pfam00665)

Seq: WJTD01000030.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-14 4 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WJTD01000006.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (335060 bp)
Overview 1 RT 1: 296325-301406 bp Neighborhood of RT #1 [296325, 301414] umuC PRK10276 RVT-GII PinE Feature: gene Location: 296325-297590 bp Feature: domain Description: umuC Location: 296328-297588 bp Feature: domain Description: umuC Location: 296328-2975 88 bp Feature: gene Location: 297592-298215 bp Feature: domain Description: PRK10276 Location: 297799-298210 bp Feature: domain Description: PRK10276 Location: 297799-298210 bp Feature: gene Location: 298674-299270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298821-299145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298821-299145 bp Feature: gene Location: 299567-299779 bp Feature: gene Location: 300965-301414 bp Feature: domain Description: PinE Location: 300974-301406 bp Feature: domain Description: PinE Location: 300974-301406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PinE (COG1961)

Seq: WJTD01000008.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (134147 bp)
Overview 1 RT 1: 4398-9283 bp Neighborhood of RT #1 [4398, 9288] Phage_GPA RVT-GII DinI Feature: gene Location: 4398-6782 bp Feature: domain Description: Phage_GPA Location: 4962-5928 bp Feature: domain Description: Phage_GPA Location: 496 2-5928 bp Feature: gene Location: 7051-7263 bp Feature: gene Location: 7338-8747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7665-8355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 6 5-8355 bp Feature: gene Location: 8855-9043 bp Feature: gene Location: 9055-9288 bp Feature: domain Description: DinI Location: 9100-9283 bp Feature: domain Description: DinI Location: 9100-9283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183)

Seq: WJTD01000009.1 Klebsiella pneumoniae strain ZRYYKP7B, whole genome shotgun sequence (107471 bp)
Overview 1 RT 1: 7185-10625 bp Neighborhood of RT #1 [7185, 10625] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 7185-7607 bp Feature: domain Description: DUF1380 Location: 7188-7482 bp Feature: domain Description: DUF1380 Location: 7 188-7 482 bp Feature: gene Location: 7604-7795 bp Feature: gene Location: 8109-9776 bp Feature: RT Description: RVT_N Location: 8157-8394 bp Feature: RT Description: RVT_N Location: 8157 -8394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8445-9087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8445-9087 bp Feature: domain Description: GIIM Note: maturase Location: 9138-9372 bp Feature: domain Description: GIIM Note: maturase Location: 9138-937 2 bp Feature: domain Description: HNHc Note: nucleases Location: 9582-9741 bp Feature: domain Description: HNHc Note: nucleases Location: 9582-97 41 bp Feature: gene Location: 10056-10238 bp Feature: gene Location: 10350-10625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)