myRT

myRT report for GCA_009797725.1_ASM979772v1

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Seq: WJTE01000001.1 Klebsiella pneumoniae strain ZRYYKP7A, whole genome shotgun sequence (5547174 bp)
Overview 1 RT 1: 1239768-1245501 bp 2 RT 2: 1370748-1372712 bp 3 RT 3: 1870961-1877432 bp 4 RT 4: 3149426-3154515 bp 5 RT 5: 3356154-3360848 bp 6 RT 6: 3683260-3686165 bp 7 RT 7: 5044554-5049060 bp Neighborhood of RT #1 [1239768, 1245506] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1370748, 1372879] RVT-GII PRK10276 Neighborhood of RT #3 [1870961, 1877446] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [3149426, 3154523] umuC PRK10276 RVT-GII PinE Neighborhood of RT #5 [3356154, 3360886] LexA_DNA_bind PRK10597 RVT-GII PRK05318 Neighborhood of RT #6 [3683260, 3686215] RVT-GII int Neighborhood of RT #7 [5044554, 5049060] RVT-GII HTH_28 rve Feature: gene Location: 1239768-1240619 bp Feature: domain Description: dam Location: 1239771-1240542 bp Feature: domain Description: dam Location: 1 239771 -1 240542 bp Feature: gene Location: 1240616-1243000 bp Feature: domain Description: Phage_GPA Location: 1241180-1242146 bp Feature: domain Description: Phage_GPA Location: 1 241 1 80-1 2421 46 bp Feature: gene Location: 1243478-1244965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1243883-1244573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 243883-1 244573 bp Feature: gene Location: 1245073-1245261 bp Feature: gene Location: 1245273-1245506 bp Feature: domain Description: DinI Location: 1245318-1245501 bp Feature: domain Description: DinI Location: 1 24531 8-1 245501 bp Feature: gene Location: 1370748-1372235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371153-1371843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 1 53-1 371 843 bp Feature: gene Location: 1372312-1372551 bp Feature: gene Location: 1372508-1372879 bp Feature: domain Description: PRK10276 Location: 1372553-1372712 bp Feature: domain Description: PRK1 0276 Location: 1 372553-1 37271 2 bp Feature: gene Location: 1870961-1872385 bp Feature: domain Description: SbcB Location: 1870967-1872383 bp Feature: domain Description: SbcB Location: 1 870967-1 872383 bp Feature: gene Location: 1872560-1873729 bp Feature: domain Description: dacD Location: 1872569-1873724 bp Feature: domain Description: dacD Location: 1 872569-1 873724 bp Feature: gene Location: 1874247-1875734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874652-1875342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 874652-1 875342 bp Feature: gene Location: 1875816-1876289 bp Feature: domain Description: PRK10016 Location: 1875819-1876278 bp Feature: domain Description: PRK1 001 6 Location: 1 87581 9-1 876278 bp Feature: gene Location: 1876373-1877446 bp Feature: domain Description: YccC Location: 1876394-1877432 bp Feature: domain Description: YccC Location: 1 876394-1 877432 bp Feature: gene Location: 3149426-3150691 bp Feature: domain Description: umuC Location: 3149429-3150689 bp Feature: domain Description: umuC Location: 31 49429-31 50689 bp Feature: gene Location: 3150693-3151112 bp Feature: domain Description: PRK10276 Location: 3150696-3151107 bp Feature: domain Description: PRK1 0276 Location: 31 50696-31 51 1 07 bp Feature: gene Location: 3151192-3152676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3151594-3152284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 51 594-31 52284 bp Feature: gene Location: 3152685-3152852 bp Feature: gene Location: 3154074-3154523 bp Feature: domain Description: PinE Location: 3154083-3154515 bp Feature: domain Description: PinE Location: 31 54083-31 5451 5 bp Feature: gene Location: 3356154-3356546 bp Feature: domain Description: LexA_DNA_bind Location: 3356232-3356421 bp Feature: domain Description: LexA_DNA_bind Location: 3356232-3356421 bp Feature: gene Location: 3356889-3357122 bp Feature: domain Description: PRK10597 Location: 3356892-3357117 bp Feature: domain Description: PRK1 0597 Location: 3356892-33571 1 7 bp Feature: gene Location: 3357201-3358685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3357603-3358293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3357603-3358293 bp Feature: gene Location: 3358842-3359060 bp Feature: gene Location: 3359525-3360886 bp Feature: domain Description: PRK05318 Location: 3359549-3360848 bp Feature: domain Description: PRK0531 8 Location: 3359549-3360848 bp Feature: gene Location: 3683260-3684744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683662-3684352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683662-3684352 bp Feature: gene Location: 3684753-3684920 bp Feature: gene Location: 3685163-3686215 bp Feature: domain Description: int Location: 3685166-3686165 bp Feature: domain Description: int Location: 36851 66-36861 65 bp Feature: gene Location: 5044554-5044868 bp Feature: gene Location: 5045020-5045253 bp Feature: gene Location: 5045307-5046791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5045709-5046399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5045709-5046399 bp Feature: gene Location: 5046984-5048387 bp Feature: domain Description: HTH_28 Location: 5047032-5047173 bp Feature: domain Description: HTH_28 Location: 5047032-50471 73 bp Feature: domain Description: rve Location: 5047413-5047779 bp Feature: domain Description: rve Location: 504741 3-5047779 bp Feature: gene Location: 5048416-5049060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609)
PinE (COG1961), LexA_DNA_bind (pfam01726), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), int (PHA02601), HTH_28 (pfam13518), rve (pfam00665)

Seq: WJTE01000003.1 Klebsiella pneumoniae strain ZRYYKP7A, whole genome shotgun sequence (118429 bp)
Overview 1 RT 1: 15922-19447 bp 2 RT 2: 72633-77986 bp Neighborhood of RT #1 [15922, 19447] Antirestrict DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [72633, 78123] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 15922-16347 bp Feature: domain Description: Antirestrict Location: 16057-16345 bp Feature: domain Description: Antirestrict Location: 16057-16345 bp Feature: gene Location: 16394-16816 bp Feature: domain Description: DUF1380 Location: 16397-16691 bp Feature: domain Description: DUF1380 Location: 16397-16691 bp Feature: gene Location: 17318-18985 bp Feature: RT Description: RVT_N Location: 17366-17603 bp Feature: RT Description: RVT_N Location: 17366-17603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17654-18296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17654-182 96 bp Feature: domain Description: GIIM Note: maturase Location: 18347-18581 bp Feature: domain Description: GIIM Note: maturase Location: 18347-18581 bp Feature: domain Description: HNHc Note: nucleases Location: 18791-18950 bp Feature: domain Description: HNHc Note: nucleases Location: 18791-18950 bp Feature: gene Location: 19022-19168 bp Feature: gene Location: 19265-19447 bp Feature: gene Location: 72633-73904 bp Feature: domain Description: umuC Location: 72636-73896 bp Feature: domain Description: umuC Location: 72 636-73896 bp Feature: gene Location: 73904-74335 bp Feature: domain Description: PRK10276 Location: 73955-74318 bp Feature: domain Description: PRK102 76 Location: 73955-74318 bp Feature: gene Location: 74742-76229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75147-75837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75147-75837 bp Feature: gene Location: 76478-77449 bp Feature: domain Description: StbA Location: 76481-77426 bp Feature: domain Description: StbA Location: 76481-7742 6 bp Feature: gene Location: 77452-78123 bp Feature: domain Description: Plasmid_stab_B Location: 77467-77674 bp Feature: domain Description: Plasmid_stab_B Location: 77467-77674 bp Feature: domain Description: Plasmid_stab_B Location: 77779-77986 bp Feature: domain Description: Plasmid_stab_B Location: 77779-77986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)