myRT

myRT report for GCA_009798445.1_ASM979844v1

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Seq: WTQQ01000137.1 Escherichia coli strain 8379wE6 NODE_137_length_9308_cov_19.9398, whole genome shotgun sequence (9308 bp)
Overview 1 RT 1: 1622-9307 bp Neighborhood of RT #1 [1622, 9306] phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 1622-4969 bp Feature: domain Description: phage_tail_N Location: 1625-2024 bp Feature: domain Description: phage_tail_N Location: 1 625-2024 bp Feature: domain Description: 34 Location: 3722-4070 bp Feature: domain Description: 34 Location: 3722-4070 bp Feature: domain Description: Collar Location: 4340-4478 bp Feature: domain Description: Collar Location: 4340-4478 bp Feature: domain Description: Phage_fiber Location: 4529-4568 bp Feature: domain Description: Phage_fiber Location: 4529-4568 bp Feature: domain Description: Phage_fiber Location: 4625-4664 bp Feature: domain Description: Phage_fiber Location: 4625-4664 bp Feature: domain Description: Phage_fiber Location: 4772-4811 bp Feature: domain Description: Phage_fiber Location: 4772-481 1 bp Feature: domain Description: Phage_fiber Location: 4817-4850 bp Feature: domain Description: Phage_fiber Location: 481 7-4850 bp Feature: gene Location: 4969-5553 bp Feature: domain Description: Caudo_TAP Location: 5185-5542 bp Feature: domain Description: Caudo_TAP Location: 51 85-5542 bp Feature: gene Location: 5999-7603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6290-6881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6290-6881 bp Feature: domain Description: TIR_2 Location: 7208-7496 bp Feature: domain Description: TIR_2 Location: 7208-7496 bp Feature: gene Location: 7963-8223 bp Feature: domain Description: PRK10597 Location: 7966-8206 bp Feature: domain Description: PRK1 0597 Location: 7966-8206 bp Feature: gene Location: 8443-9306 bp Feature: domain Description: prfC Location: 8461-9307 bp Feature: domain Description: prfC Location: 8461 -9307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: WTQQ01000289.1 Escherichia coli strain 8379wE6 NODE_563_length_3048_cov_5.44608, whole genome shotgun sequence (3048 bp)
Overview 1 RT 1: 27-2559 bp Neighborhood of RT #1 [27, 2559] RVT-Retrons HTH_XRE Feature: gene Location: 27-827 bp Feature: gene Location: 993-1943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1176-1710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1176-1710 bp Feature: gene Location: 1927-2229 bp Feature: domain Description: HTH_XRE Location: 1939-2101 bp Feature: domain Description: HTH_XRE Location: 1939-2 101 bp Feature: gene Location: 2266-2559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons