myRT

myRT report for GCA_009807355.1_ASM980735v1

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Seq: WUDL01000164.1 Pseudomonas aeruginosa strain UMB0802 NODE_164_length_2421_cov_19.116827, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-2418 bp Neighborhood of RT #1 [86, 2418] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 1 43-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 -1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 -1 757 bp Feature: gene Location: 2074-2202 bp Feature: gene Location: 2233-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WUDL01000072.1 Pseudomonas aeruginosa strain UMB0802 NODE_72_length_32679_cov_7.894968, whole genome shotgun sequence (32679 bp)
Overview 1 RT 1: 192-4763 bp Neighborhood of RT #1 [192, 4975] RVT-UG5 nitrilase COG4127 TIGR02646 Feature: gene Location: 192-2672 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 195-624 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 195-62 4 bp Feature: domain Description: nitrilase Location: 1986-2568 bp Feature: domain Description: nitrilase Location: 1986-2 568 bp Feature: gene Location: 3042-4034 bp Feature: domain Description: COG4127 Location: 3048-4023 bp Feature: domain Description: COG412 7 Location: 3048-402 3 bp Feature: gene Location: 4097-4975 bp Feature: domain Description: TIGR02646 Location: 4310-4763 bp Feature: domain Description: TIGR02 646 Location: 4310-4763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), TIGR02646 (TIGR02646 family protein)