myRT

myRT report for GCA_009807625.1_ASM980762v1

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Seq: WUDM01000207.1 Pseudomonas aeruginosa strain UMB0801 NODE_207_length_2421_cov_13.759372, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 1-2289 bp Neighborhood of RT #1 [1, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-2336 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: domain Description: RVT_N Location: 675-91 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1 668-1 899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 21 33-2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WUDM01000073.1 Pseudomonas aeruginosa strain UMB0801 NODE_73_length_32583_cov_5.735118, whole genome shotgun sequence (32583 bp)
Overview 1 RT 1: 27609-32288 bp Neighborhood of RT #1 [27609, 32392] TIGR02646 COG4127 RVT-UG5 nitrilase Feature: gene Location: 27609-28487 bp Feature: domain Description: TIGR02646 Location: 27822-28275 bp Feature: domain Description: TIGR02 646 Location: 2 782 2 -2 82 75 bp Feature: gene Location: 28550-29542 bp Feature: domain Description: COG4127 Location: 28556-29531 bp Feature: domain Description: COG412 7 Location: 2 8556-2 9531 bp Feature: gene Location: 29912-32392 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29915-30344 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9915-30344 bp Feature: domain Description: nitrilase Location: 31706-32288 bp Feature: domain Description: nitrilase Location: 31706-32 2 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG5, nitrilase (cl11424)