myRT

myRT report for GCA_009811715.1_ASM981171v1

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Seq: BLIT01000008.1 Streptococcus canis FU6 DNA, ScFU6_contig08, whole genome shotgun sequence (146520 bp)
Overview 1 RT 1: 120547-146345 bp Neighborhood of RT #1 [120547, 146518] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 isopep_sspB_C2 isopep_sspB_C2 AgI_II_C2 LPXTG_anchor HNHc RVT-GII strep_RK_lipo Adhesin_P1_N GbpC GbpC AgI_II_C2 isopep_sspB_C2 COG5340 Cas9 RVT-GII Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type Feature: gene Location: 120547-121356 bp Feature: gene Location: 121490-121831 bp Feature: gene Location: 121928-123340 bp Feature: RT Description: RVT_N Location: 122165-122408 bp Feature: RT Description: RVT_N Location: 1 221 65-1 22408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122453-123101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 22453-1 231 01 bp Feature: domain Description: GIIM Note: maturase Location: 123158-123335 bp Feature: domain Description: GIIM Note: maturase Location: 1 231 58-1 23335 bp Feature: gene Location: 123708-129719 bp Feature: domain Description: N6_Mtase Location: 125736-126324 bp Feature: domain Description: N6_Mtase Location: 1 25736-1 26324 bp Feature: domain Description: COG4646 Location: 126918-129222 bp Feature: domain Description: COG4646 Location: 1 2691 8-1 29222 bp Feature: domain Description: KOG0390 Location: 129489-129690 bp Feature: domain Description: KOG0390 Location: 1 29489-1 29690 bp Feature: gene Location: 129770-130300 bp Feature: gene Location: 130497-132266 bp Feature: domain Description: isopep_sspB_C2 Location: 130551-131070 bp Feature: domain Description: isopep_sspB_C2 Location: 1 30551 -1 31 070 bp Feature: domain Description: isopep_sspB_C2 Location: 131082-131601 bp Feature: domain Description: isopep_sspB_C2 Location: 1 31 082-1 31 601 bp Feature: domain Description: AgI_II_C2 Location: 131619-132069 bp Feature: domain Description: AgI_II_C2 Location: 1 31 61 9-1 32069 bp Feature: domain Description: LPXTG_anchor Location: 132168-132255 bp Feature: domain Description: LPXTG_anchor Location: 1 321 68-1 32255 bp Feature: gene Location: 132391-132876 bp Feature: domain Description: HNHc Note: nucleases Location: 132631-132766 bp Feature: domain Description: HNHc Note: nucleases Location: 1 32631 -1 32766 bp Feature: gene Location: 133072-134151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133333-134029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33333-1 34029 bp Feature: gene Location: 134866-138027 bp Feature: domain Description: strep_RK_lipo Location: 134923-135028 bp Feature: domain Description: strep_RK_lipo Location: 1 34923-1 35028 bp Feature: domain Description: Adhesin_P1_N Location: 135178-135367 bp Feature: domain Description: Adhesin_P1 _N Location: 1 351 78-1 35367 bp Feature: domain Description: GbpC Location: 135976-136168 bp Feature: domain Description: GbpC Location: 1 35976-1 361 68 bp Feature: domain Description: GbpC Location: 136168-136756 bp Feature: domain Description: GbpC Location: 1 361 68-1 36756 bp Feature: domain Description: AgI_II_C2 Location: 137059-137461 bp Feature: domain Description: AgI_II_C2 Location: 1 37059-1 37461 bp Feature: domain Description: isopep_sspB_C2 Location: 137515-138004 bp Feature: domain Description: isopep_sspB_C2 Location: 1 3751 5-1 38004 bp Feature: gene Location: 138291-138422 bp Feature: gene Location: 139268-139891 bp Feature: domain Description: COG5340 Location: 139334-139802 bp Feature: domain Description: COG5340 Location: 1 39334-1 39802 bp Feature: gene Location: 140245-141000 bp Feature: domain Description: Cas9 Location: 140608-140845 bp Feature: domain Description: Cas9 Location: 1 40608-1 40845 bp Feature: gene Location: 141004-142158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141331-142066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 331 -1 42066 bp Feature: gene Location: 142867-145560 bp Feature: domain Description: Peptidase_M23 Location: 144310-144523 bp Feature: domain Description: Peptidase_M23 Location: 1 4431 0-1 44523 bp Feature: domain Description: Phage_lysozyme2 Location: 144664-145174 bp Feature: domain Description: Phage_lysozyme2 Location: 1 44664-1 451 74 bp Feature: domain Description: PRK08581 Location: 145294-145543 bp Feature: domain Description: PRK08581 Location: 1 45294-1 45543 bp Feature: gene Location: 145562-146518 bp Feature: domain Description: TraC-F-type Location: 145649-146345 bp Feature: domain Description: TraC-F-type Location: 1 45649-1 46345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), isopep_sspB_C2 (TIGR04228), AgI_II_C2 (pfam17998), LPXTG_anchor (TIGR01167), HNHc (smart00507)
strep_RK_lipo (TIGR03726), Adhesin_P1_N (pfam18652), GbpC (pfam08363), COG5340 (Transcriptional regulator, predicted component of viral defense system ), Cas9 (COG3513), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746)

Seq: BLIT01000013.1 Streptococcus canis FU6 DNA, ScFU6_contig13, whole genome shotgun sequence (210625 bp)
Overview 1 RT 1: 81457-85331 bp Neighborhood of RT #1 [81457, 85333] AcrR YozG RVT-GII HNHc Maff2 Feature: gene Location: 81457-82071 bp Feature: domain Description: AcrR Location: 81475-81940 bp Feature: domain Description: AcrR Location: 81475-81940 bp Feature: gene Location: 82087-82308 bp Feature: domain Description: YozG Location: 82090-82288 bp Feature: domain Description: YozG Location: 82 090-82 2 88 bp Feature: gene Location: 82619-84487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82949-83684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 949-83684 bp Feature: domain Description: HNHc Note: nucleases Location: 84215-84377 bp Feature: domain Description: HNHc Note: nucleases Location: 842 15-84377 bp Feature: gene Location: 84591-84734 bp Feature: gene Location: 85202-85333 bp Feature: domain Description: Maff2 Location: 85205-85331 bp Feature: domain Description: Maff2 Location: 852 05-85331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), YozG (COG3655), RVT-GII, HNHc (smart00507), Maff2 (pfam12750)

Seq: BLIT01000048.1 Streptococcus canis FU6 DNA, ScFU6_contig48, whole genome shotgun sequence (2397 bp)
Overview 1 RT 1: 39-2274 bp Neighborhood of RT #1 [39, 2309] RVT_N RVT-GII GIIM HNH Feature: gene Location: 39-233 bp Feature: gene Location: 359-544 bp Feature: gene Location: 612-2309 bp Feature: RT Description: RVT_N Location: 708-948 bp Feature: RT Description: RVT_N Location: 708-948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996-1656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996-1656 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1944 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1944 bp Feature: domain Description: HNH Note: nucleases Location: 2157-2274 bp Feature: domain Description: HNH Note: nucleases Location: 2157-2274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)