myRT

myRT report for GCA_009819955.1_ASM981995v1

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Seq: VNXD01000012.1 Escherichia coli strain HH45S NODE_12_length_132752_cov_148.526565, whole genome shotgun sequence (132752 bp)
Overview 1 RT 1: 4481-8187 bp 2 RT 2: 32335-35907 bp Neighborhood of RT #1 [4481, 8216] TnpB_IS66 RVT-GII GIIM HNHc PHA02517 Neighborhood of RT #2 [32335, 35907] RVT_N RVT-GII RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 4481-4792 bp Feature: domain Description: TnpB_IS66 Location: 4508-4787 bp Feature: domain Description: TnpB_IS66 Location: 4508-4787 bp Feature: gene Location: 4999-5139 bp Feature: gene Location: 5589-6350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5799-6345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5799-6345 bp Feature: gene Location: 6414-7064 bp Feature: domain Description: GIIM Note: maturase Location: 6423-6657 bp Feature: domain Description: GIIM Note: maturase Location: 6423-6657 bp Feature: domain Description: HNHc Note: nucleases Location: 6870-7029 bp Feature: domain Description: HNHc Note: nucleases Location: 6870-7029 bp Feature: gene Location: 7608-8216 bp Feature: domain Description: PHA02517 Location: 7632-8187 bp Feature: domain Description: PHA0251 7 Location: 7632-81 87 bp Feature: gene Location: 32335-32631 bp Feature: gene Location: 32732-32872 bp Feature: gene Location: 32894-33439 bp Feature: domain Description: RVT_N Location: 32951-33188 bp Feature: domain Description: RVT_N Location: 32951 -331 88 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33239-33395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33239-33395 bp Feature: gene Location: 33696-34619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33708-33888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33708-33888 bp Feature: domain Description: GIIM Note: maturase Location: 33942-34173 bp Feature: domain Description: GIIM Note: maturase Location: 33942-341 73 bp Feature: domain Description: HNHc Note: nucleases Location: 34404-34563 bp Feature: domain Description: HNHc Note: nucleases Location: 34404-34563 bp Feature: gene Location: 34696-35598 bp Feature: domain Description: DUF1281 Location: 34765-35293 bp Feature: domain Description: DUF1 281 Location: 34765-35293 bp Feature: domain Description: DUF1281_C Location: 35299-35527 bp Feature: domain Description: DUF1 281 _C Location: 35299-35527 bp Feature: gene Location: 35602-35907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: VNXD01000004.1 Escherichia coli strain HH45S NODE_4_length_318185_cov_201.554563, whole genome shotgun sequence (318185 bp)
Overview 1 RT 1: 186895-194705 bp Neighborhood of RT #1 [186895, 194710] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 186895-189171 bp Feature: domain Description: Phage_GPA Location: 187294-188281 bp Feature: domain Description: Phage_GPA Location: 1872 94-1882 81 bp Feature: gene Location: 189233-189493 bp Feature: gene Location: 189659-191203 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 190076-190529 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 190076-19052 9 bp Feature: gene Location: 191398-191544 bp Feature: gene Location: 191546-191686 bp Feature: gene Location: 191754-192944 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191904-192486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191904-192 486 bp Feature: gene Location: 192941-193648 bp Feature: gene Location: 193691-194710 bp Feature: domain Description: Q Location: 193694-194705 bp Feature: domain Description: Q Location: 193694-194705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: VNXD01000005.1 Escherichia coli strain HH45S NODE_5_length_311386_cov_200.240343, whole genome shotgun sequence (311386 bp)
Overview 1 RT 1: 34157-39059 bp Neighborhood of RT #1 [34157, 39067] RVT-Retrons PBP2_CrgA_like_5 HTH_1 PBP2_CrgA_like_5 Feature: gene Location: 34157-34351 bp Feature: gene Location: 34634-35602 bp Feature: gene Location: 35589-36521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35691-36282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 5691-3 6282 bp Feature: gene Location: 37384-37599 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 37387-37573 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 3 73 87-3 7573 bp Feature: gene Location: 38183-39067 bp Feature: domain Description: HTH_1 Location: 38207-38381 bp Feature: domain Description: HTH_1 Location: 3 8207-3 83 81 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 38462-39059 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 3 8462-3 9059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), HTH_1 (pfam00126)