myRT

myRT report for GCA_009820115.1_ASM982011v1

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Seq: VNXE01000007.1 Escherichia sp. HH41S NODE_10_length_208218_cov_161.376370, whole genome shotgun sequence (208218 bp)
Overview 1 RT 1: 36774-40653 bp Neighborhood of RT #1 [36774, 40658] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 36774-37232 bp Feature: domain Description: dut Location: 36780-37227 bp Feature: domain Description: dut Location: 36780-37227 bp Feature: gene Location: 37339-37935 bp Feature: domain Description: slmA Location: 37345-37921 bp Feature: domain Description: slmA Location: 37345-37921 bp Feature: gene Location: 37979-38938 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38114-38663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 381 1 4-38663 bp Feature: gene Location: 39235-39891 bp Feature: domain Description: pyrE Location: 39253-39886 bp Feature: domain Description: pyrE Location: 39253-39886 bp Feature: gene Location: 39942-40658 bp Feature: domain Description: rph Location: 39945-40653 bp Feature: domain Description: rph Location: 39945-40653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: VNXE01000065.1 Escherichia sp. HH41S NODE_19_length_105989_cov_88.261613, whole genome shotgun sequence (105989 bp)
Overview 1 RT 1: 83413-85861 bp Neighborhood of RT #1 [83413, 85896] RVT-GII GIIM PRK15121 PRK15121 Feature: gene Location: 83413-83553 bp Feature: gene Location: 83859-84224 bp Feature: gene Location: 84350-84829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84572-84791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84572 -84791 bp Feature: gene Location: 84877-85038 bp Feature: domain Description: GIIM Note: maturase Location: 84883-85033 bp Feature: domain Description: GIIM Note: maturase Location: 84883-85033 bp Feature: gene Location: 85063-85896 bp Feature: domain Description: PRK15121 Location: 85078-85402 bp Feature: domain Description: PRK1512 1 Location: 85078-85402 bp Feature: domain Description: PRK15121 Location: 85660-85861 bp Feature: domain Description: PRK1512 1 Location: 85660-85861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK15121 (MDR efflux pump AcrAB transcriptional activator RobA)

Seq: VNXE01000059.1 Escherichia sp. HH41S NODE_24_length_54552_cov_96.262873, whole genome shotgun sequence (54552 bp)
Overview 1 RT 1: 47116-51470 bp Neighborhood of RT #1 [47116, 51535] DUF1173 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 47116-48375 bp Feature: domain Description: DUF1173 Location: 47176-48334 bp Feature: domain Description: DUF1173 Location: 47176-483 3 4 bp Feature: gene Location: 48378-48824 bp Feature: domain Description: PHA02517 Location: 48381-48822 bp Feature: domain Description: PHA02517 Location: 483 81-48822 bp Feature: gene Location: 48941-50464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49214-49946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49214-49946 bp Feature: domain Description: GIIM Note: maturase Location: 50021-50219 bp Feature: domain Description: GIIM Note: maturase Location: 50021-50219 bp Feature: gene Location: 50418-50843 bp Feature: gene Location: 51056-51535 bp Feature: domain Description: PHA02517 Location: 51116-51470 bp Feature: domain Description: PHA02517 Location: 51116-51470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1173 (pfam06666), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VNXE01000074.1 Escherichia sp. HH41S NODE_45_length_4178_cov_92.795903, whole genome shotgun sequence (4178 bp)
Overview 1 RT 1: 1-3257 bp Neighborhood of RT #1 [1, 3262] COG3436 RVT_N RVT-GII YkfC HNHc TnpB_IS66 Feature: gene Location: 1-540 bp Feature: domain Description: COG3436 Location: 313-541 bp Feature: domain Description: COG34 36 Location: 313-54 1 bp Feature: gene Location: 683-2353 bp Feature: domain Description: RVT_N Location: 731-974 bp Feature: domain Description: RVT_N Location: 731-974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1661 bp Feature: domain Description: YkfC Location: 1793-2033 bp Feature: domain Description: YkfC Location: 1793-2033 bp Feature: domain Description: HNHc Note: nucleases Location: 2159-2318 bp Feature: domain Description: HNHc Note: nucleases Location: 2159-2318 bp Feature: gene Location: 2380-2787 bp Feature: gene Location: 2951-3262 bp Feature: domain Description: TnpB_IS66 Location: 2978-3257 bp Feature: domain Description: TnpB_IS66 Location: 2978-3257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), TnpB_IS66 (pfam05717)

Seq: VNXE01000106.1 Escherichia sp. HH41S NODE_54_length_2536_cov_137.506303, whole genome shotgun sequence (2536 bp)
Overview 1 RT 1: 2-2381 bp Neighborhood of RT #1 [2, 2416] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-175 bp Feature: gene Location: 287-469 bp Feature: gene Location: 749-2416 bp Feature: domain Description: RVT_N Location: 797-1034 bp Feature: domain Description: RVT_N Location: 797-1034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085 -1727 bp Feature: domain Description: GIIM Note: maturase Location: 1778-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1778-2012 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VNXE01000107.1 Escherichia sp. HH41S NODE_56_length_2126_cov_330.978038, whole genome shotgun sequence (2126 bp)
Overview 1 RT 1: 311-1718 bp Neighborhood of RT #1 [311, 1810] RVT-GII GIIM Feature: gene Location: 311-1810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 4-1421 bp Feature: domain Description: GIIM Note: maturase Location: 1511-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1511-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)