myRT

myRT report for GCA_009820375.1_ASM982037v1

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Seq: VNXV01000017.1 Escherichia coli strain HH20S NODE_17_length_91340_cov_173.756878, whole genome shotgun sequence (91340 bp)
Overview 1 RT 1: 2-6923 bp Neighborhood of RT #1 [2, 6928] Ail_Lom phage_tail_N 7tmA_amine_R-like Peptidase_S74 APC_N_CC RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 2-436 bp Feature: domain Description: Ail_Lom Location: 5-434 bp Feature: domain Description: Ail_Lom Location: 5-434 bp Feature: gene Location: 501-4262 bp Feature: domain Description: phage_tail_N Location: 504-903 bp Feature: domain Description: phage_tail_N Location: 504-903 bp Feature: domain Description: 7tmA_amine_R-like Location: 1314-3306 bp Feature: domain Description: 7tmA_amine_R-like Location: 1 31 4-3306 bp Feature: domain Description: Peptidase_S74 Location: 3831-3978 bp Feature: domain Description: Peptidase_S74 Location: 3831 -3978 bp Feature: domain Description: APC_N_CC Location: 4131-4254 bp Feature: domain Description: APC_N_CC Location: 41 31 -4254 bp Feature: gene Location: 4558-5928 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4786-5392 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4786-5392 bp Feature: gene Location: 5906-6457 bp Feature: domain Description: SLATT_5 Location: 5912-6428 bp Feature: domain Description: SLATT_5 Location: 591 2-6428 bp Feature: gene Location: 6680-6928 bp Feature: domain Description: PRK10597 Location: 6683-6923 bp Feature: domain Description: PRK1 0597 Location: 6683-6923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: VNXV01000156.1 Escherichia coli strain HH20S NODE_225_length_582_cov_184.350495, whole genome shotgun sequence (582 bp)
Overview 1 RT 1: 3-582 bp Neighborhood of RT #1 [3, 581] RVT-GII RVT-GII Feature: gene Location: 3-413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 04-2 82 bp Feature: gene Location: 441-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VNXV01000003.1 Escherichia coli strain HH20S NODE_3_length_212359_cov_176.016351, whole genome shotgun sequence (212359 bp)
Overview 1 RT 1: 210176-212351 bp Neighborhood of RT #1 [210176, 212356] YesM RVT-GII GIIM Feature: gene Location: 210176-211438 bp Feature: domain Description: YesM Location: 210689-211430 bp Feature: domain Description: YesM Location: 210689-21143 0 bp Feature: gene Location: 211468-211638 bp Feature: gene Location: 211988-212356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211991-212123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211991-212123 bp Feature: domain Description: GIIM Note: maturase Location: 212171-212351 bp Feature: domain Description: GIIM Note: maturase Location: 212171-2123 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: VNXV01000180.1 Escherichia coli strain HH20S NODE_408_length_348_cov_198.217712, whole genome shotgun sequence (348 bp)
Overview 1 RT 1: 1-283 bp Neighborhood of RT #1 [1, 321] RVT-GII Feature: gene Location: 1-321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181-283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181-283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VNXV01000052.1 Escherichia coli strain HH20S NODE_52_length_27506_cov_170.786576, whole genome shotgun sequence (27506 bp)
Overview 1 RT 1: 22416-25834 bp Neighborhood of RT #1 [22416, 25899] Ogr_Delta PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 22416-22676 bp Feature: domain Description: Ogr_Delta Location: 22425-22566 bp Feature: domain Description: Ogr_Delta Location: 22425 -225 66 bp Feature: gene Location: 22790-23164 bp Feature: domain Description: PHA02517 Location: 22793-23153 bp Feature: domain Description: PHA025 17 Location: 22793-2315 3 bp Feature: gene Location: 23359-24882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23632-24364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23632-24364 bp Feature: domain Description: GIIM Note: maturase Location: 24439-24637 bp Feature: domain Description: GIIM Note: maturase Location: 24439-24637 bp Feature: gene Location: 24836-25261 bp Feature: gene Location: 25474-25899 bp Feature: domain Description: PHA02517 Location: 25498-25834 bp Feature: domain Description: PHA025 17 Location: 25 498-25 834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VNXV01000071.1 Escherichia coli strain HH20S NODE_71_length_14858_cov_184.235843, whole genome shotgun sequence (14858 bp)
Overview 1 RT 1: 7736-11625 bp Neighborhood of RT #1 [7736, 11630] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7736-8050 bp Feature: gene Location: 8448-8645 bp Feature: gene Location: 8814-9248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006-9222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9006 -9222 bp Feature: gene Location: 9221-9874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224-9632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9224-96 32 bp Feature: domain Description: GIIM Note: maturase Location: 9680-9872 bp Feature: domain Description: GIIM Note: maturase Location: 96 80-9872 bp Feature: gene Location: 10250-10468 bp Feature: gene Location: 10599-11630 bp Feature: domain Description: LacI Location: 10641-10776 bp Feature: domain Description: LacI Location: 106 41-10776 bp Feature: domain Description: PBP1_GntR Location: 10815-11625 bp Feature: domain Description: PBP1_GntR Location: 10815-116 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: VNXV01000089.1 Escherichia coli strain HH20S NODE_89_length_5432_cov_97.264052, whole genome shotgun sequence (5432 bp)
Overview 1 RT 1: 2-3712 bp Neighborhood of RT #1 [2, 3717] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 2-190 bp Feature: gene Location: 524-733 bp Feature: gene Location: 868-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1966 bp Feature: domain Description: Intron_maturas2 Location: 2080-2338 bp Feature: domain Description: Intron_maturas2 Location: 2080-2338 bp Feature: domain Description: HNHc Note: nucleases Location: 2512-2674 bp Feature: domain Description: HNHc Note: nucleases Location: 2512-267 4 bp Feature: gene Location: 2964-3416 bp Feature: domain Description: PRK13732 Location: 2970-3414 bp Feature: domain Description: PRK137 32 Location: 297 0-3414 bp Feature: gene Location: 3484-3717 bp Feature: domain Description: DUF905 Location: 3514-3712 bp Feature: domain Description: DUF905 Location: 3514-37 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: VNXV01000091.1 Escherichia coli strain HH20S NODE_91_length_5116_cov_182.355031, whole genome shotgun sequence (5116 bp)
Overview 1 RT 1: 3-2202 bp Neighborhood of RT #1 [3, 2216] RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 3-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-162 bp Feature: gene Location: 569-1600 bp Feature: domain Description: Asparaginase_2 Location: 659-1592 bp Feature: domain Description: Asparaginase_2 Location: 659-1592 bp Feature: gene Location: 1938-2216 bp Feature: domain Description: DUF5339 Location: 2001-2202 bp Feature: domain Description: DUF5339 Location: 2001-2202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)