myRT

myRT report for GCA_009820425.1_ASM982042v1

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Seq: VNXY01000019.1 Escherichia coli strain HH20C NODE_19_length_103696_cov_164.930650, whole genome shotgun sequence (103696 bp)
Overview 1 RT 1: 83933-90124 bp Neighborhood of RT #1 [83933, 90124] RVT-UG7 PRK09692 Feature: gene Location: 83933-84073 bp Feature: gene Location: 84183-84923 bp Feature: gene Location: 84920-86548 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 85328-85757 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 85328-85757 bp Feature: gene Location: 86541-87725 bp Feature: domain Description: PRK09692 Location: 86547-87702 bp Feature: domain Description: PRK09692 Location: 86547-87702 bp Feature: gene Location: 88262-90124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional)

Seq: VNXY01000001.1 Escherichia coli strain HH20C NODE_1_length_374330_cov_159.692678, whole genome shotgun sequence (374330 bp)
Overview 1 RT 1: 327424-333124 bp Neighborhood of RT #1 [327424, 333124] met_A_Alw26 RVT-GII Feature: gene Location: 327424-329676 bp Feature: domain Description: met_A_Alw26 Location: 327751-329452 bp Feature: domain Description: met_A_Alw2 6 Location: 32 7751-32 9452 bp Feature: gene Location: 329742-329942 bp Feature: gene Location: 330754-331191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330760-331051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330760-331051 bp Feature: gene Location: 332271-332627 bp Feature: gene Location: 332720-333124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), RVT-GII

Seq: VNXY01000065.1 Escherichia coli strain HH20C NODE_65_length_8275_cov_101.402293, whole genome shotgun sequence (8275 bp)
Overview 1 RT 1: 2532-5884 bp Neighborhood of RT #1 [2532, 5886] PinE RVT-GII RVT-GII PHA02517 Feature: gene Location: 2532-3113 bp Feature: domain Description: PinE Location: 2535-3090 bp Feature: domain Description: PinE Location: 253 5-3 090 bp Feature: gene Location: 3137-3751 bp Feature: gene Location: 3808-4416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4087-4306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4087-43 06 bp Feature: gene Location: 4391-4987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-4817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403 -4817 bp Feature: gene Location: 5024-5338 bp Feature: gene Location: 5515-5886 bp Feature: domain Description: PHA02517 Location: 5518-5884 bp Feature: domain Description: PHA02517 Location: 5518-5884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: VNXY01000725.1 Escherichia coli strain HH20C NODE_729_length_247_cov_0.758824, whole genome shotgun sequence (247 bp)
Overview 1 RT 1: 2-242 bp Neighborhood of RT #1 [2, 244] RVT-GII Feature: gene Location: 2-244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-24 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII