myRT

myRT report for GCA_009820535.1_ASM982053v1

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Seq: VNYD01000103.1 Escherichia coli strain HH18S NODE_103_length_9537_cov_104.877907, whole genome shotgun sequence (9537 bp)
Overview 1 RT 1: 3585-6651 bp Neighborhood of RT #1 [3585, 6728] RVT-GII GIIM RVT-GII InsQ Feature: gene Location: 3585-3755 bp Feature: gene Location: 4070-4234 bp Feature: gene Location: 4519-5463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4528-5041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4528-5041 bp Feature: domain Description: GIIM Note: maturase Location: 5101-5305 bp Feature: domain Description: GIIM Note: maturase Location: 51 01 -5305 bp Feature: gene Location: 5482-5889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5818-5887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581 8-5887 bp Feature: gene Location: 5886-6134 bp Feature: gene Location: 6306-6728 bp Feature: domain Description: InsQ Location: 6312-6651 bp Feature: domain Description: InsQ Location: 631 2-6651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: VNYD01000144.1 Escherichia coli strain HH18S NODE_144_length_3413_cov_99.858513, whole genome shotgun sequence (3413 bp)
Overview 1 RT 1: 2101-3412 bp Neighborhood of RT #1 [2101, 3411] DEDD_Tnp_IS110 RVT-UG4 Feature: gene Location: 2101-2409 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2134-2299 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 134-2 2 99 bp Feature: gene Location: 2524-2673 bp Feature: gene Location: 2689-3411 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3091-3412 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3091-3412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-UG4

Seq: VNYD01000181.1 Escherichia coli strain HH18S NODE_182_length_1384_cov_206.195103, whole genome shotgun sequence (1384 bp)
Overview 1 RT 1: 2-1383 bp Neighborhood of RT #1 [2, 1383] RVT_N RVT-GII Feature: gene Location: 2-790 bp Feature: domain Description: RVT_N Location: 50-287 bp Feature: domain Description: RVT_N Location: 50-287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338-773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 8-773 bp Feature: gene Location: 827-973 bp Feature: gene Location: 1240-1383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: VNYD01000043.1 Escherichia coli strain HH18S NODE_43_length_39968_cov_180.124239, whole genome shotgun sequence (39968 bp)
Overview 1 RT 1: 29023-34126 bp Neighborhood of RT #1 [29023, 34126] PRK09692 RVT-Retrons Feature: gene Location: 29023-29238 bp Feature: gene Location: 29403-30617 bp Feature: domain Description: PRK09692 Location: 29412-30588 bp Feature: domain Description: PRK09692 Location: 294 12-30588 bp Feature: gene Location: 31628-32851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31781-32396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31781-32396 bp Feature: gene Location: 32868-33614 bp Feature: gene Location: 33830-34126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons

Seq: VNYD01000594.1 Escherichia coli strain HH18S NODE_598_length_292_cov_383.827907, whole genome shotgun sequence (292 bp)
Overview 1 RT 1: 3-291 bp Neighborhood of RT #1 [3, 290] RVT-GII GIIM Feature: gene Location: 3-290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-60 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-60 bp Feature: domain Description: GIIM Note: maturase Location: 111-291 bp Feature: domain Description: GIIM Note: maturase Location: 111-291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VNYD01000607.1 Escherichia coli strain HH18S NODE_611_length_283_cov_401.300971, whole genome shotgun sequence (283 bp)
Overview 1 RT 1: 1-265 bp Neighborhood of RT #1 [1, 282] RVT-GII Feature: gene Location: 1-282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-26 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VNYD01000090.1 Escherichia coli strain HH18S NODE_90_length_13524_cov_177.466870, whole genome shotgun sequence (13524 bp)
Overview 1 RT 1: 5533-13436 bp Neighborhood of RT #1 [5533, 13436] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 RVT-UG8 Feature: gene Location: 5533-8115 bp Feature: domain Description: mutS1 Location: 5584-8104 bp Feature: domain Description: mutS1 Location: 5584-8104 bp Feature: gene Location: 8260-9720 bp Feature: domain Description: INT_Rci_Hp1_C Location: 8635-8842 bp Feature: domain Description: INT_Rci_Hp1_C Location: 8635-8842 bp Feature: domain Description: INT_P4_C Location: 9061-9598 bp Feature: domain Description: INT_P4_C Location: 9061-9598 bp Feature: gene Location: 9717-10979 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9999-10494 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9999-10494 bp Feature: gene Location: 10976-12994 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11546-11996 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11546-11996 bp Feature: gene Location: 13233-13436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3, RVT-UG8