myRT

myRT report for GCA_009820755.1_ASM982075v1

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Seq: VNYP01000024.1 Escherichia coli strain HH15H NODE_34_length_35759_cov_177.628412, whole genome shotgun sequence (35759 bp)
Overview 1 RT 1: 17351-21634 bp Neighborhood of RT #1 [17351, 21642] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 17351-18256 bp Feature: gene Location: 18514-18711 bp Feature: gene Location: 18742-19281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19072-19150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9072-1 91 50 bp Feature: gene Location: 19309-19830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19315-19597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 5-1 9597 bp Feature: domain Description: GIIM Note: maturase Location: 19645-19825 bp Feature: domain Description: GIIM Note: maturase Location: 1 9645-1 9825 bp Feature: gene Location: 20152-20340 bp Feature: gene Location: 20380-21642 bp Feature: domain Description: YesM Location: 20893-21634 bp Feature: domain Description: YesM Location: 20893-21 634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: VNYP01000052.1 Escherichia coli strain HH15H NODE_39_length_29524_cov_105.883621, whole genome shotgun sequence (29524 bp)
Overview 1 RT 1: 23070-26123 bp Neighborhood of RT #1 [23070, 26123] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 23070-23492 bp Feature: domain Description: DUF1380 Location: 23073-23370 bp Feature: domain Description: DUF1380 Location: 2 3073-2 3370 bp Feature: gene Location: 23544-23879 bp Feature: gene Location: 23994-25661 bp Feature: domain Description: RVT_N Location: 24042-24279 bp Feature: domain Description: RVT_N Location: 2 4042 -2 42 79 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24330-24972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4330-2 4972 bp Feature: domain Description: GIIM Note: maturase Location: 25023-25257 bp Feature: domain Description: GIIM Note: maturase Location: 2 502 3-2 52 57 bp Feature: domain Description: HNHc Note: nucleases Location: 25467-25626 bp Feature: domain Description: HNHc Note: nucleases Location: 2 5467-2 562 6 bp Feature: gene Location: 25698-25844 bp Feature: gene Location: 25941-26123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VNYP01000023.1 Escherichia coli strain HH15H NODE_48_length_11735_cov_177.411734, whole genome shotgun sequence (11735 bp)
Overview 1 RT 1: 6986-9768 bp Neighborhood of RT #1 [6986, 11117] GerD RVT-UG1 Feature: gene Location: 6986-7420 bp Feature: domain Description: GerD Location: 7064-7178 bp Feature: domain Description: GerD Location: 7064-7178 bp Feature: gene Location: 7429-8544 bp Feature: gene Location: 8646-11117 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9258-9768 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9258-9768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1

Seq: VNYP01000127.1 Escherichia coli strain HH15H NODE_50_length_11665_cov_99.761391, whole genome shotgun sequence (11665 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: gene Location: 291-602 bp Feature: domain Description: PRK10173 Location: 294-513 bp Feature: domain Description: PRK10173 Location: 294 -513 bp Feature: gene Location: 586-1035 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: VNYP01000089.1 Escherichia coli strain HH15H NODE_70_length_3053_cov_103.564180, whole genome shotgun sequence (3053 bp)
Overview 1 RT 1: 1-2140 bp Neighborhood of RT #1 [1, 2178] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-75 4 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: gene Location: 1449-1745 bp Feature: domain Description: PHA02517 Location: 1452-1701 bp Feature: domain Description: PHA025 17 Location: 145 2-1701 bp Feature: gene Location: 1774-2178 bp Feature: domain Description: InsE Location: 1804-2140 bp Feature: domain Description: InsE Location: 1804-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: VNYP01000006.1 Escherichia coli strain HH15H NODE_88_length_1144_cov_198.905342, whole genome shotgun sequence (1144 bp)
Overview 1 RT 1: 3-1142 bp Neighborhood of RT #1 [3, 1142] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276 -330 bp Feature: gene Location: 960-1142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII