myRT

myRT report for GCA_009820915.1_ASM982091v1

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Seq: VNYX01000016.1 Escherichia coli strain HH13H NODE_16_length_106490_cov_200.928571, whole genome shotgun sequence (106490 bp)
Overview 1 RT 1: 47182-53693 bp Neighborhood of RT #1 [47182, 53818] HTH_36 AAA_21 RVT-Retrons INT_Rci_Hp1_C INT_Rci_Hp1_C Feature: gene Location: 47182-47715 bp Feature: domain Description: HTH_36 Location: 47368-47524 bp Feature: domain Description: HTH_36 Location: 47368-47524 bp Feature: gene Location: 48175-50292 bp Feature: domain Description: AAA_21 Location: 48250-49159 bp Feature: domain Description: AAA_21 Location: 48250-491 59 bp Feature: gene Location: 50459-51562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51 1 61 bp Feature: gene Location: 51771-52349 bp Feature: gene Location: 52361-53818 bp Feature: domain Description: INT_Rci_Hp1_C Location: 52739-52937 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 52739-52937 bp Feature: domain Description: INT_Rci_Hp1_C Location: 53222-53693 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 53222-53693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), AAA_21 (pfam13304), RVT-Retrons, INT_Rci_Hp1_C (cd00796)

Seq: VNYX01000027.1 Escherichia coli strain HH13H NODE_27_length_57834_cov_194.880066, whole genome shotgun sequence (57834 bp)
Overview 1 RT 1: 37902-42813 bp Neighborhood of RT #1 [37902, 42878] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 37902-39779 bp Feature: domain Description: LysM Location: 38142-38280 bp Feature: domain Description: LysM Location: 38142 -382 80 bp Feature: domain Description: IAT_beta Location: 38361-39186 bp Feature: domain Description: IAT_beta Location: 38361-39186 bp Feature: domain Description: PRK15318 Location: 39387-39510 bp Feature: domain Description: PRK15318 Location: 39387-39510 bp Feature: domain Description: Invasin_D3 Location: 39525-39762 bp Feature: domain Description: Invasin_D3 Location: 3952 5-39762 bp Feature: gene Location: 39781-40215 bp Feature: domain Description: PHA02517 Location: 39784-40207 bp Feature: domain Description: PHA02 517 Location: 39784-402 07 bp Feature: gene Location: 40338-41861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40611-41343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40611-41343 bp Feature: domain Description: GIIM Note: maturase Location: 41418-41616 bp Feature: domain Description: GIIM Note: maturase Location: 41418-41616 bp Feature: gene Location: 41815-42240 bp Feature: gene Location: 42453-42878 bp Feature: domain Description: PHA02517 Location: 42474-42813 bp Feature: domain Description: PHA02 517 Location: 42 474-42 813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)