myRT

myRT report for GCA_009821175.1_ASM982117v1

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Seq: VDKH01000173.1 Escherichia coli strain G17 NODE_173_length_1598_cov_3.11925, whole genome shotgun sequence (1598 bp)
Overview 1 RT 1: 3-1596 bp Neighborhood of RT #1 [3, 1595] PHA02517 RVT-GII Feature: gene Location: 3-155 bp Feature: domain Description: PHA02517 Location: 6-90 bp Feature: domain Description: PHA0251 7 Location: 6-90 bp Feature: gene Location: 747-1595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020-1 596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: VDKH01000024.1 Escherichia coli strain G17 NODE_24_length_43038_cov_252.959, whole genome shotgun sequence (43038 bp)
Overview 1 RT 1: 19418-24835 bp Neighborhood of RT #1 [19418, 24835] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19418-19852 bp Feature: domain Description: psiB Location: 19421-19847 bp Feature: domain Description: psiB Location: 1942 1-19847 bp Feature: gene Location: 19905-21185 bp Feature: gene Location: 21377-23278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21644-22475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1644-2 2 475 bp Feature: domain Description: Intron_maturas2 Location: 22589-22847 bp Feature: domain Description: Intron_maturas2 Location: 2 2 589-2 2 847 bp Feature: domain Description: HNHc Note: nucleases Location: 23021-23183 bp Feature: domain Description: HNHc Note: nucleases Location: 2 302 1-2 3183 bp Feature: gene Location: 23841-24383 bp Feature: gene Location: 24641-24835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VDKH01000260.1 Escherichia coli strain G17 NODE_260_length_1190_cov_2.0837, whole genome shotgun sequence (1190 bp)
Overview 1 RT 1: 32-1006 bp Neighborhood of RT #1 [32, 1188] PHA02517 RVT-GII Feature: gene Location: 32-466 bp Feature: domain Description: PHA02517 Location: 35-458 bp Feature: domain Description: PHA02517 Location: 3 5-458 bp Feature: gene Location: 589-879 bp Feature: gene Location: 910-1188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: VDKH01000349.1 Escherichia coli strain G17 NODE_349_length_929_cov_1.17277, whole genome shotgun sequence (929 bp)
Overview 1 RT 1: 243-929 bp Neighborhood of RT #1 [243, 928] RVT-GII RVT-GII Feature: gene Location: 243-677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 35-651 bp Feature: gene Location: 650-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653-929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653-929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VDKH01000728.1 Escherichia coli strain G17 NODE_728_length_507_cov_2.10177, whole genome shotgun sequence (507 bp)
Overview 1 RT 1: 3-504 bp Neighborhood of RT #1 [3, 506] RVT_N RVT-GII Feature: gene Location: 3-506 bp Feature: domain Description: RVT_N Location: 6-123 bp Feature: domain Description: RVT_N Location: 6-123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-5 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: VDKH01000007.1 Escherichia coli strain G17 NODE_7_length_235048_cov_160.311, whole genome shotgun sequence (235048 bp)
Overview 1 RT 1: 117027-121836 bp Neighborhood of RT #1 [117027, 121841] PRK09678 PRK09678 Psu RVT-Retrons PRK09692 Feature: gene Location: 117027-117473 bp Feature: domain Description: PRK09678 Location: 117036-117108 bp Feature: domain Description: PRK096 78 Location: 117036 -117108 bp Feature: domain Description: PRK09678 Location: 117231-117381 bp Feature: domain Description: PRK096 78 Location: 117231-117381 bp Feature: gene Location: 117547-118119 bp Feature: domain Description: Psu Location: 117565-118102 bp Feature: domain Description: Psu Location: 11756 5-118102 bp Feature: gene Location: 118309-119808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 119020-119575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 119020-119575 bp Feature: gene Location: 119810-120487 bp Feature: gene Location: 120675-121841 bp Feature: domain Description: PRK09692 Location: 120684-121836 bp Feature: domain Description: PRK096 92 Location: 1206 84-121836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons, PRK09692 (Integrase; provisional)