myRT

myRT report for GCA_009821235.1_ASM982123v1

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Seq: VDKD01000303.1 Escherichia coli strain G11 NODE_303_length_649_cov_1.64646, whole genome shotgun sequence (649 bp)
Overview 1 RT 1: 2-461 bp Neighborhood of RT #1 [2, 646] RVT-GII Feature: gene Location: 2-646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VDKD01000046.1 Escherichia coli strain G11 NODE_46_length_30319_cov_185.672, whole genome shotgun sequence (30319 bp)
Overview 1 RT 1: 26704-29875 bp Neighborhood of RT #1 [26704, 29877] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 26704-27387 bp Feature: domain Description: PRK10276 Location: 27007-27370 bp Feature: domain Description: PRK102 76 Location: 2 7007-2 7370 bp Feature: gene Location: 27441-28043 bp Feature: gene Location: 28018-29028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28024-28636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 802 4-2 8636 bp Feature: gene Location: 29151-29363 bp Feature: gene Location: 29374-29877 bp Feature: domain Description: DDE_Tnp_IS1 Location: 29485-29875 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2 9485-2 9875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: VDKD01000542.1 Escherichia coli strain G11 NODE_542_length_412_cov_1.10364, whole genome shotgun sequence (412 bp)
Overview 1 RT 1: 1-411 bp Neighborhood of RT #1 [1, 410] COG4584 RVT-GII Feature: gene Location: 1-213 bp Feature: domain Description: COG4584 Location: 4-211 bp Feature: domain Description: COG4584 Location: 4-211 bp Feature: gene Location: 270-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 15-411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII

Seq: VDKD01000065.1 Escherichia coli strain G11 NODE_65_length_7980_cov_95.5735, whole genome shotgun sequence (7980 bp)
Overview 1 RT 1: 1257-7260 bp Neighborhood of RT #1 [1257, 7277] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 1257-2621 bp Feature: domain Description: Phage_int_SAM_5 Location: 1656-1893 bp Feature: domain Description: Phage_int_SAM_5 Location: 1656-1893 bp Feature: domain Description: INT_C_like_1 Location: 1989-2505 bp Feature: domain Description: INT_C_like_1 Location: 1989-2505 bp Feature: gene Location: 2860-4044 bp Feature: domain Description: PRK09692 Location: 2866-4021 bp Feature: domain Description: PRK09692 Location: 2866-4 021 bp Feature: gene Location: 4037-5665 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4445-4874 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4 4 4 5-4 874 bp Feature: gene Location: 5662-6402 bp Feature: gene Location: 6705-7277 bp Feature: domain Description: Psu Location: 6723-7260 bp Feature: domain Description: Psu Location: 6723-7260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)