myRT

myRT report for GCA_009821735.1_ASM982173v1

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Seq: VDJD01000020.1 Klebsiella pneumoniae strain Scmy86 NODE_20_length_120440_cov_101.041, whole genome shotgun sequence (120440 bp)
Overview 1 RT 1: 480-7531 bp Neighborhood of RT #1 [480, 7548] PRK09692 Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 480-1343 bp Feature: domain Description: PRK09692 Location: 504-1341 bp Feature: domain Description: PRK09692 Location: 504-1 341 bp Feature: gene Location: 1604-2044 bp Feature: domain Description: Integrase_1 Location: 1610-1826 bp Feature: domain Description: Integrase_1 Location: 1 61 0-1 826 bp Feature: gene Location: 2101-4179 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2509-2953 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2509-2953 bp Feature: gene Location: 4179-6788 bp Feature: domain Description: FimD Location: 4236-6777 bp Feature: domain Description: FimD Location: 4236-6777 bp Feature: gene Location: 6820-7548 bp Feature: domain Description: FimC Location: 6868-7531 bp Feature: domain Description: FimC Location: 6868-7531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VDJD01000040.1 Klebsiella pneumoniae strain Scmy86 NODE_40_length_15521_cov_72.8122, whole genome shotgun sequence (15521 bp)
Overview 1 RT 1: 795-5214 bp Neighborhood of RT #1 [795, 5214] COG3547 PHA02517 RVT-GII GIIM Feature: gene Location: 795-1871 bp Feature: domain Description: COG3547 Location: 834-1755 bp Feature: domain Description: COG3547 Location: 834-1755 bp Feature: gene Location: 2090-2290 bp Feature: domain Description: PHA02517 Location: 2093-2255 bp Feature: domain Description: PHA02 517 Location: 2 093-2 2 55 bp Feature: gene Location: 2413-3936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2686-3418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 686-3418 bp Feature: domain Description: GIIM Note: maturase Location: 3493-3691 bp Feature: domain Description: GIIM Note: maturase Location: 3493-3691 bp Feature: gene Location: 4230-4601 bp Feature: gene Location: 4711-5214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)