myRT

myRT report for GCA_009821765.1_ASM982176v1

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Seq: VDJC01000020.1 Klebsiella pneumoniae strain HeB85 NODE_20_length_120360_cov_98.0363, whole genome shotgun sequence (120360 bp)
Overview 1 RT 1: 112893-119761 bp Neighborhood of RT #1 [112893, 119763] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112893-113621 bp Feature: domain Description: FimC Location: 112941-113604 bp Feature: domain Description: FimC Location: 1 1 2941 -1 1 3604 bp Feature: gene Location: 113653-116262 bp Feature: domain Description: FimD Location: 113710-116251 bp Feature: domain Description: FimD Location: 1 1 371 0-1 1 6251 bp Feature: gene Location: 116262-118340 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116670-117114 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6670-1 1 71 1 4 bp Feature: gene Location: 118397-118837 bp Feature: domain Description: Integrase_1 Location: 118403-118619 bp Feature: domain Description: Integrase_1 Location: 1 1 8403-1 1 861 9 bp Feature: gene Location: 119098-119763 bp Feature: domain Description: INT_P4_C Location: 119203-119761 bp Feature: domain Description: INT_P4_C Location: 1 1 9203-1 1 9761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: VDJC01000040.1 Klebsiella pneumoniae strain HeB85 NODE_40_length_15521_cov_58.8498, whole genome shotgun sequence (15521 bp)
Overview 1 RT 1: 795-5214 bp Neighborhood of RT #1 [795, 5214] COG3547 PHA02517 RVT-GII GIIM Feature: gene Location: 795-1871 bp Feature: domain Description: COG3547 Location: 834-1755 bp Feature: domain Description: COG3547 Location: 834-1755 bp Feature: gene Location: 2090-2290 bp Feature: domain Description: PHA02517 Location: 2093-2255 bp Feature: domain Description: PHA02 517 Location: 2 093-2 2 55 bp Feature: gene Location: 2413-3936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2686-3418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 686-3418 bp Feature: domain Description: GIIM Note: maturase Location: 3493-3691 bp Feature: domain Description: GIIM Note: maturase Location: 3493-3691 bp Feature: gene Location: 4230-4601 bp Feature: gene Location: 4711-5214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)