myRT

myRT report for GCA_009821995.1_ASM982199v1

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Seq: VDIQ01000037.1 Klebsiella pneumoniae strain SCcd68 NODE_37_length_43598_cov_125.62, whole genome shotgun sequence (43598 bp)
Overview 1 RT 1: 15909-19366 bp Neighborhood of RT #1 [15909, 19366] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 15909-16091 bp Feature: gene Location: 16107-17609 bp Feature: domain Description: PRK13889 Location: 16110-16692 bp Feature: domain Description: PRK1 3889 Location: 1 61 1 0-1 6692 bp Feature: gene Location: 17686-18786 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17827-18379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7827-1 8379 bp Feature: gene Location: 18779-19060 bp Feature: domain Description: HTH_XRE Location: 18794-18959 bp Feature: domain Description: HTH_XRE Location: 1 8794-1 8959 bp Feature: gene Location: 19151-19366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: VDIQ01000057.1 Klebsiella pneumoniae strain SCcd68 NODE_59_length_13834_cov_78.6312, whole genome shotgun sequence (13834 bp)
Overview 1 RT 1: 2845-6448 bp Neighborhood of RT #1 [2845, 6573] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2845-3102 bp Feature: gene Location: 3133-3408 bp Feature: gene Location: 3982-5649 bp Feature: RT Description: RVT_N Location: 4030-4267 bp Feature: RT Description: RVT_N Location: 4030-42 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318-4960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318-4960 bp Feature: domain Description: GIIM Note: maturase Location: 5011-5245 bp Feature: domain Description: GIIM Note: maturase Location: 5011-52 45 bp Feature: domain Description: HNHc Note: nucleases Location: 5455-5614 bp Feature: domain Description: HNHc Note: nucleases Location: 5455-5614 bp Feature: gene Location: 5963-6154 bp Feature: gene Location: 6151-6573 bp Feature: domain Description: DUF1380 Location: 6154-6448 bp Feature: domain Description: DUF1380 Location: 6154-6448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: VDIQ01000063.1 Klebsiella pneumoniae strain SCcd68 NODE_65_length_9971_cov_184.05, whole genome shotgun sequence (9971 bp)
Overview 1 RT 1: 5871-9970 bp Neighborhood of RT #1 [5871, 9969] umuC PRK10276 RVT-GII StbA Feature: gene Location: 5871-7142 bp Feature: domain Description: umuC Location: 5874-7134 bp Feature: domain Description: umuC Location: 5874-713 4 bp Feature: gene Location: 7142-7849 bp Feature: domain Description: PRK10276 Location: 7466-7832 bp Feature: domain Description: PRK10276 Location: 7466-783 2 bp Feature: gene Location: 7979-9466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8384-9074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 84-9074 bp Feature: gene Location: 9715-9969 bp Feature: domain Description: StbA Location: 9718-9970 bp Feature: domain Description: StbA Location: 9718-9970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406)