myRT

myRT report for GCA_009822025.1_ASM982202v1

Download annotations/find similar RTs

Seq: VDIP01000019.1 Klebsiella pneumoniae strain SCcd67 NODE_19_length_113132_cov_142.369, whole genome shotgun sequence (113132 bp)
Overview 1 RT 1: 105574-112442 bp Neighborhood of RT #1 [105574, 112444] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 105574-106302 bp Feature: domain Description: FimC Location: 105622-106285 bp Feature: domain Description: FimC Location: 1 05622-1 06285 bp Feature: gene Location: 106334-108943 bp Feature: domain Description: FimD Location: 106391-108932 bp Feature: domain Description: FimD Location: 1 06391 -1 08932 bp Feature: gene Location: 108943-111021 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 109351-109795 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 09351 -1 09795 bp Feature: gene Location: 111078-111518 bp Feature: domain Description: Integrase_1 Location: 111084-111300 bp Feature: domain Description: Integrase_1 Location: 1 1 1 084-1 1 1 300 bp Feature: gene Location: 111779-112444 bp Feature: domain Description: INT_P4_C Location: 111884-112442 bp Feature: domain Description: INT_P4_C Location: 1 1 1 884-1 1 2442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: VDIP01000004.1 Klebsiella pneumoniae strain SCcd67 NODE_4_length_274884_cov_120.546, whole genome shotgun sequence (274884 bp)
Overview 1 RT 1: 119-2008 bp Neighborhood of RT #1 [119, 2172] RVT-GII PRK10276 Feature: gene Location: 119-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 4-12 14 bp Feature: gene Location: 1683-1844 bp Feature: gene Location: 1801-2172 bp Feature: domain Description: PRK10276 Location: 1846-2008 bp Feature: domain Description: PRK102 76 Location: 1846-2 008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)