myRT

myRT report for GCA_009822465.1_ASM982246v1

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Seq: VDHT01000017.1 Klebsiella pneumoniae strain SCsl8 NODE_17_length_120338_cov_107.833, whole genome shotgun sequence (120338 bp)
Overview 1 RT 1: 633-7486 bp Neighborhood of RT #1 [633, 7503] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 633-1298 bp Feature: domain Description: INT_P4_C Location: 738-1296 bp Feature: domain Description: INT_P4_C Location: 738-1 296 bp Feature: gene Location: 1559-1999 bp Feature: domain Description: Integrase_1 Location: 1565-1781 bp Feature: domain Description: Integrase_1 Location: 1 565-1 781 bp Feature: gene Location: 2056-4134 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2464-2908 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2464-2908 bp Feature: gene Location: 4134-6743 bp Feature: domain Description: FimD Location: 4191-6732 bp Feature: domain Description: FimD Location: 41 91 -6732 bp Feature: gene Location: 6775-7503 bp Feature: domain Description: FimC Location: 6823-7486 bp Feature: domain Description: FimC Location: 6823-7486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VDHT01000024.1 Klebsiella pneumoniae strain SCsl8 NODE_24_length_68041_cov_109.485, whole genome shotgun sequence (68041 bp)
Overview 1 RT 1: 40224-43643 bp Neighborhood of RT #1 [40224, 43643] Tra5 PHA02517 RVT-GII GIIM Feature: gene Location: 40224-40682 bp Feature: domain Description: Tra5 Location: 40236-40659 bp Feature: domain Description: Tra5 Location: 402 36-40659 bp Feature: gene Location: 40696-41115 bp Feature: domain Description: PHA02517 Location: 40699-41107 bp Feature: domain Description: PHA02 517 Location: 40699-41107 bp Feature: gene Location: 41238-42761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41511-42243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41511-42 2 43 bp Feature: domain Description: GIIM Note: maturase Location: 42357-42516 bp Feature: domain Description: GIIM Note: maturase Location: 42 357-42 516 bp Feature: gene Location: 43175-43426 bp Feature: gene Location: 43503-43643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VDHT01000028.1 Klebsiella pneumoniae strain SCsl8 NODE_28_length_35583_cov_159.234, whole genome shotgun sequence (35583 bp)
Overview 1 RT 1: 5804-9993 bp Neighborhood of RT #1 [5804, 9993] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 5804-6475 bp Feature: domain Description: Plasmid_stab_B Location: 5819-6026 bp Feature: domain Description: Plasmid_stab_B Location: 5819-6026 bp Feature: domain Description: Plasmid_stab_B Location: 6131-6338 bp Feature: domain Description: Plasmid_stab_B Location: 613 1-63 3 8 bp Feature: gene Location: 6478-7449 bp Feature: domain Description: StbA Location: 6481-7426 bp Feature: domain Description: StbA Location: 6481-7426 bp Feature: gene Location: 7698-9185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8103-8793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8103 -8793 bp Feature: gene Location: 9339-9575 bp Feature: gene Location: 9598-9993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII

Seq: VDHT01000049.1 Klebsiella pneumoniae strain SCsl8 NODE_49_length_8030_cov_118.703, whole genome shotgun sequence (8030 bp)
Overview 1 RT 1: 731-4458 bp Neighborhood of RT #1 [731, 4458] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 731-1033 bp Feature: domain Description: InsE Location: 740-1022 bp Feature: domain Description: InsE Location: 74 0-1022 bp Feature: gene Location: 1060-1485 bp Feature: domain Description: PHA02517 Location: 1084-1420 bp Feature: domain Description: PHA02517 Location: 1084 -14 20 bp Feature: gene Location: 2077-3600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2350-3082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2350-3082 bp Feature: domain Description: GIIM Note: maturase Location: 3157-3355 bp Feature: domain Description: GIIM Note: maturase Location: 3157-3355 bp Feature: gene Location: 3765-4169 bp Feature: domain Description: PHA02517 Location: 3768-4158 bp Feature: domain Description: PHA02517 Location: 3768-4 158 bp Feature: gene Location: 4279-4458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)