myRT

myRT report for GCA_009822705.1_ASM982270v1

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Seq: VDLQ01000017.1 Escherichia coli strain G8 NODE_17_length_85670_cov_123.788, whole genome shotgun sequence (85670 bp)
Overview 1 RT 1: 22378-29997 bp Neighborhood of RT #1 [22378, 30086] proA PRK09692 RVT-UG3 RVT-UG8 PRK09678 Feature: gene Location: 22378-23631 bp Feature: domain Description: proA Location: 22405-23596 bp Feature: domain Description: proA Location: 22405-23596 bp Feature: gene Location: 23985-25151 bp Feature: domain Description: PRK09692 Location: 23991-25137 bp Feature: domain Description: PRK09692 Location: 23991 -251 37 bp Feature: gene Location: 25155-26381 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 25443-25911 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 25443-2591 1 bp Feature: gene Location: 26382-28382 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26886-27330 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26886-27330 bp Feature: gene Location: 28982-29794 bp Feature: gene Location: 29814-30086 bp Feature: domain Description: PRK09678 Location: 29823-29997 bp Feature: domain Description: PRK09678 Location: 29823-29997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: VDLQ01000052.1 Escherichia coli strain G8 NODE_52_length_29430_cov_117.337, whole genome shotgun sequence (29430 bp)
Overview 1 RT 1: 8275-11059 bp Neighborhood of RT #1 [8275, 11059] Inovirus_Gp2 RVT-GII RVT-GII Feature: gene Location: 8275-8424 bp Feature: gene Location: 8506-9069 bp Feature: domain Description: Inovirus_Gp2 Location: 8563-9007 bp Feature: domain Description: Inovirus_Gp2 Location: 8563-9007 bp Feature: gene Location: 9395-9967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9398-9605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9398-9605 bp Feature: gene Location: 10021-10557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10135-10486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10135-10486 bp Feature: gene Location: 10544-10852 bp Feature: gene Location: 10886-11059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-GII

Seq: VDLQ01000079.1 Escherichia coli strain G8 NODE_79_length_11970_cov_216.179, whole genome shotgun sequence (11970 bp)
Overview 1 RT 1: 520-5304 bp Neighborhood of RT #1 [520, 5336] HTH_38 Tra8 PHA02517 RVT-GII GIIM TraH Feature: gene Location: 520-1671 bp Feature: domain Description: HTH_38 Location: 529-643 bp Feature: domain Description: HTH_3 8 Location: 529-643 bp Feature: domain Description: Tra8 Location: 679-1660 bp Feature: domain Description: Tra8 Location: 679-1660 bp Feature: gene Location: 1802-2227 bp Feature: domain Description: PHA02517 Location: 1826-2162 bp Feature: domain Description: PHA02517 Location: 1826-2162 bp Feature: gene Location: 2819-4342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092-3824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 092-3 824 bp Feature: domain Description: GIIM Note: maturase Location: 3899-4097 bp Feature: domain Description: GIIM Note: maturase Location: 3 899-4097 bp Feature: gene Location: 4429-4614 bp Feature: gene Location: 4887-5336 bp Feature: domain Description: TraH Location: 4986-5304 bp Feature: domain Description: TraH Location: 4986-53 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TraH (pfam06122)

Seq: VDLQ01000086.1 Escherichia coli strain G8 NODE_86_length_7541_cov_64.1646, whole genome shotgun sequence (7541 bp)
Overview 1 RT 1: 4623-7536 bp Neighborhood of RT #1 [4623, 7538] RVT-GII RVT-GII GIIM RAYT PRK11097 Feature: gene Location: 4623-4760 bp Feature: gene Location: 4850-5119 bp Feature: gene Location: 5144-5788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5432-5783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 32-5783 bp Feature: gene Location: 5795-6490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5798-6050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5798-6050 bp Feature: domain Description: GIIM Note: maturase Location: 6098-6329 bp Feature: domain Description: GIIM Note: maturase Location: 6098-6329 bp Feature: gene Location: 6565-7182 bp Feature: domain Description: RAYT Location: 6721-7084 bp Feature: domain Description: RAYT Location: 6721-7084 bp Feature: gene Location: 7383-7538 bp Feature: domain Description: PRK11097 Location: 7398-7536 bp Feature: domain Description: PRK11097 Location: 7398-7536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11097 (cellulase)