myRT

myRT report for GCA_009822965.1_ASM982296v1

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Seq: VDLC01000023.1 Escherichia coli strain G43 NODE_23_length_80054_cov_111.712, whole genome shotgun sequence (80054 bp)
Overview 1 RT 1: 40455-45734 bp Neighborhood of RT #1 [40455, 45850] RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 40455-40595 bp Feature: gene Location: 40705-41445 bp Feature: gene Location: 41442-43070 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 41850-42279 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 41 850-42279 bp Feature: gene Location: 43063-44247 bp Feature: domain Description: PRK09692 Location: 43069-44224 bp Feature: domain Description: PRK09692 Location: 43069-44224 bp Feature: gene Location: 44516-45850 bp Feature: domain Description: Phage_int_SAM_5 Location: 44885-45122 bp Feature: domain Description: Phage_int_SAM_5 Location: 44885-451 22 bp Feature: domain Description: INT_C_like_1 Location: 45218-45734 bp Feature: domain Description: INT_C_like_1 Location: 4521 8-45734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: VDLC01000042.1 Escherichia coli strain G43 NODE_42_length_40397_cov_114.865, whole genome shotgun sequence (40397 bp)
Overview 1 RT 1: 432-5462 bp Neighborhood of RT #1 [432, 5464] SR_ResInv RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 432-941 bp Feature: gene Location: 932-1150 bp Feature: domain Description: SR_ResInv Location: 977-1148 bp Feature: domain Description: SR_ResInv Location: 977-1148 bp Feature: gene Location: 1434-3038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1725-2316 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172 5-2 316 bp Feature: domain Description: TIR_2 Location: 2643-2931 bp Feature: domain Description: TIR_2 Location: 2 643-2 931 bp Feature: gene Location: 3398-3658 bp Feature: domain Description: PRK10597 Location: 3401-3641 bp Feature: domain Description: PRK10597 Location: 3401-3641 bp Feature: gene Location: 3878-5464 bp Feature: domain Description: prfC Location: 3896-5462 bp Feature: domain Description: prfC Location: 3896-5462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_ResInv (cd03768), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: VDLC01000058.1 Escherichia coli strain G43 NODE_58_length_23781_cov_115.43, whole genome shotgun sequence (23781 bp)
Overview 1 RT 1: 8923-11999 bp Neighborhood of RT #1 [8923, 12064] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8923-9144 bp Feature: domain Description: PHA02517 Location: 8926-9139 bp Feature: domain Description: PHA02517 Location: 8926-913 9 bp Feature: gene Location: 9199-9402 bp Feature: gene Location: 9470-10816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9566-10298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9566-10298 bp Feature: domain Description: GIIM Note: maturase Location: 10373-10571 bp Feature: domain Description: GIIM Note: maturase Location: 103 73 -10571 bp Feature: gene Location: 10947-11372 bp Feature: gene Location: 11585-12064 bp Feature: domain Description: PHA02517 Location: 11645-11999 bp Feature: domain Description: PHA02517 Location: 11645-11999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)