myRT

myRT report for GCA_009823295.1_ASM982329v1

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Seq: VDKM01000010.1 Escherichia coli strain G28 NODE_10_length_135460_cov_102.339, whole genome shotgun sequence (135460 bp)
Overview 1 RT 1: 47660-51542 bp Neighborhood of RT #1 [47660, 51547] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47660-48118 bp Feature: domain Description: dut Location: 47666-48113 bp Feature: domain Description: dut Location: 47666-481 1 3 bp Feature: gene Location: 48225-48821 bp Feature: domain Description: slmA Location: 48231-48807 bp Feature: domain Description: slmA Location: 48231 -48807 bp Feature: gene Location: 48867-49826 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49002-49551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49002-49551 bp Feature: gene Location: 50124-50780 bp Feature: domain Description: pyrE Location: 50142-50775 bp Feature: domain Description: pyrE Location: 501 42-50775 bp Feature: gene Location: 50831-51547 bp Feature: domain Description: rph Location: 50834-51542 bp Feature: domain Description: rph Location: 50834-51 542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: VDKM01000022.1 Escherichia coli strain G28 NODE_22_length_70340_cov_100.064, whole genome shotgun sequence (70340 bp)
Overview 1 RT 1: 68451-70300 bp Neighborhood of RT #1 [68451, 70338] Asparaginase_2 RVT-GII Feature: gene Location: 68451-69482 bp Feature: domain Description: Asparaginase_2 Location: 68541-69474 bp Feature: domain Description: Asparaginase_2 Location: 68541-69474 bp Feature: gene Location: 69809-69958 bp Feature: gene Location: 70006-70338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70198-70300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70198-70300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII

Seq: VDKM01000057.1 Escherichia coli strain G28 NODE_57_length_13155_cov_94.2618, whole genome shotgun sequence (13155 bp)
Overview 1 RT 1: 10583-12974 bp Neighborhood of RT #1 [10583, 13153] InsE PHA02517 RVT-GII Feature: gene Location: 10583-10909 bp Feature: domain Description: InsE Location: 10586-10907 bp Feature: domain Description: InsE Location: 10586-10907 bp Feature: gene Location: 10931-11377 bp Feature: domain Description: PHA02517 Location: 11045-11312 bp Feature: domain Description: PHA02517 Location: 11045-113 12 bp Feature: gene Location: 11969-13153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12242-12974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12242-12974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: VDKM01000065.1 Escherichia coli strain G28 NODE_65_length_9589_cov_94.7561, whole genome shotgun sequence (9589 bp)
Overview 1 RT 1: 3-1520 bp Neighborhood of RT #1 [3, 1520] RVT-GII RVT-GII GIIM Feature: gene Location: 3-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-297 bp Feature: gene Location: 456-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 62-74 4 bp Feature: domain Description: GIIM Note: maturase Location: 792-972 bp Feature: domain Description: GIIM Note: maturase Location: 792-972 bp Feature: gene Location: 1076-1222 bp Feature: gene Location: 1332-1520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)