myRT

myRT report for GCA_009830285.1_ASM983028v1

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Seq: WUQX01000001.1 Lachnospiraceae bacterium WCA-9-b2 tig00000001_pilon, whole genome shotgun sequence (5426837 bp)
Overview 1 RT 1: 158687-164006 bp 2 RT 2: 654922-659925 bp 3 RT 3: 678242-684015 bp 4 RT 4: 739886-749492 bp 5 RT 5: 808376-817765 bp 6 RT 6: 1680332-1685425 bp 7 RT 7: 2517169-2521176 bp 8 RT 8: 2945576-2950994 bp 9 RT 9: 3056851-3059370 bp 10 RT 10: 3858356-3862893 bp 11 RT 11: 5061124-5067901 bp Neighborhood of RT #1 [158687, 164006] DUF3801 VirD4 RVT-GII Intron_maturas2 Neighborhood of RT #2 [654922, 659925] DUF3801 VirD4 RVT-GII KOG4768 Neighborhood of RT #3 [678242, 684015] COG4646 RVT_N RVT-GII GIIM Neighborhood of RT #4 [739886, 749497] DUF3801 VirD4 RVT-GII DDE_5 DDE_Tnp_2 TraG-D_C RVT-GII Intron_maturas2 Maff2 Neighborhood of RT #5 [808376, 817881] DUF3801 VirD4 RVT-GII Intron_maturas2 Maff2 RVT-GII HNHc PrgI Neighborhood of RT #6 [1680332, 1685442] TnpV RVT-GII Intron_maturas2 Cas_CXXC_CXXC RVT-GII VirD4 VirD4 DUF3801 Neighborhood of RT #7 [2517169, 2521184] COG3547 COG3547 RVT-GII PRK08295 SpoU Neighborhood of RT #8 [2945576, 2950994] DUF3801 VirD4 RVT-GII Intron_maturas2 Neighborhood of RT #9 [3056851, 3059480] Avd_like RVT-DGRs 7tmA_NPYR-like KOG4232 Neighborhood of RT #10 [3858356, 3862893] TnpW VirD4 RVT-GII Intron_maturas2 Neighborhood of RT #11 [5061124, 5068035] TraC-F-type PHA02517 RVT-GII HNHc PrgI Feature: gene Location: 158687-159217 bp Feature: domain Description: DUF3801 Location: 158834-159200 bp Feature: domain Description: DUF3801 Location: 1 58834-1 59200 bp Feature: gene Location: 159214-160848 bp Feature: domain Description: VirD4 Location: 159520-160825 bp Feature: domain Description: VirD4 Location: 1 59520-1 60825 bp Feature: gene Location: 161453-163279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161720-162557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 720-1 62557 bp Feature: domain Description: Intron_maturas2 Location: 162665-162920 bp Feature: domain Description: Intron_maturas2 Location: 1 62665-1 62920 bp Feature: gene Location: 163292-163729 bp Feature: gene Location: 163671-164006 bp Feature: gene Location: 654922-655266 bp Feature: domain Description: DUF3801 Location: 655036-655240 bp Feature: domain Description: DUF3801 Location: 655036-655240 bp Feature: gene Location: 655498-657045 bp Feature: domain Description: VirD4 Location: 655696-657022 bp Feature: domain Description: VirD4 Location: 655696-657022 bp Feature: gene Location: 657650-658825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657917-658754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65791 7-658754 bp Feature: gene Location: 658834-659475 bp Feature: domain Description: KOG4768 Location: 658915-659464 bp Feature: domain Description: KOG4768 Location: 65891 5-659464 bp Feature: gene Location: 659488-659925 bp Feature: gene Location: 678242-680503 bp Feature: domain Description: COG4646 Location: 678266-680201 bp Feature: domain Description: COG4646 Location: 678266-680201 bp Feature: gene Location: 680575-681345 bp Feature: gene Location: 681053-682531 bp Feature: RT Description: RVT_N Location: 681326-681563 bp Feature: RT Description: RVT_N Location: 681 326-681 563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681614-682259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681 61 4-682259 bp Feature: domain Description: GIIM Note: maturase Location: 682316-682517 bp Feature: domain Description: GIIM Note: maturase Location: 68231 6-68251 7 bp Feature: gene Location: 682673-682948 bp Feature: gene Location: 683068-684015 bp Feature: gene Location: 739886-740362 bp Feature: domain Description: DUF3801 Location: 739949-740309 bp Feature: domain Description: DUF3801 Location: 739949-740309 bp Feature: gene Location: 740550-741113 bp Feature: domain Description: VirD4 Location: 740670-741048 bp Feature: domain Description: VirD4 Location: 740670-741 048 bp Feature: gene Location: 741741-742625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742053-742548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742053-742548 bp Feature: gene Location: 742865-743149 bp Feature: gene Location: 743236-744609 bp Feature: domain Description: DDE_5 Location: 743464-744085 bp Feature: domain Description: DDE_5 Location: 743464-744085 bp Feature: domain Description: DDE_Tnp_2 Location: 744106-744286 bp Feature: domain Description: DDE_Tnp_2 Location: 7441 06-744286 bp Feature: gene Location: 745244-745711 bp Feature: gene Location: 745792-746214 bp Feature: domain Description: TraG-D_C Location: 745942-746191 bp Feature: domain Description: TraG-D_C Location: 745942-7461 91 bp Feature: gene Location: 746819-748645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747086-747923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747086-747923 bp Feature: domain Description: Intron_maturas2 Location: 748031-748286 bp Feature: domain Description: Intron_maturas2 Location: 748031 -748286 bp Feature: gene Location: 748658-749056 bp Feature: gene Location: 749339-749497 bp Feature: domain Description: Maff2 Location: 749342-749492 bp Feature: domain Description: Maff2 Location: 749342-749492 bp Feature: gene Location: 808376-808852 bp Feature: domain Description: DUF3801 Location: 808439-808799 bp Feature: domain Description: DUF3801 Location: 808439-808799 bp Feature: gene Location: 808849-810396 bp Feature: domain Description: VirD4 Location: 809155-810373 bp Feature: domain Description: VirD4 Location: 8091 55-81 0373 bp Feature: gene Location: 811001-812827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811268-812105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 1 268-81 21 05 bp Feature: domain Description: Intron_maturas2 Location: 812213-812468 bp Feature: domain Description: Intron_maturas2 Location: 81 221 3-81 2468 bp Feature: gene Location: 812840-813238 bp Feature: gene Location: 813523-813654 bp Feature: domain Description: Maff2 Location: 813526-813652 bp Feature: domain Description: Maff2 Location: 81 3526-81 3652 bp Feature: gene Location: 813924-814115 bp Feature: gene Location: 814415-816289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814742-815480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 4742-81 5480 bp Feature: domain Description: HNHc Note: nucleases Location: 816020-816176 bp Feature: domain Description: HNHc Note: nucleases Location: 81 6020-81 61 76 bp Feature: gene Location: 816552-817424 bp Feature: gene Location: 817474-817881 bp Feature: domain Description: PrgI Location: 817492-817765 bp Feature: domain Description: PrgI Location: 81 7492-81 7765 bp Feature: gene Location: 1680332-1680715 bp Feature: domain Description: TnpV Location: 1680383-1680707 bp Feature: domain Description: TnpV Location: 1 680383-1 680707 bp Feature: gene Location: 1680780-1680968 bp Feature: gene Location: 1680981-1682231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1680984-1681509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 680984-1 681 509 bp Feature: domain Description: Intron_maturas2 Location: 1681617-1681872 bp Feature: domain Description: Intron_maturas2 Location: 1 681 61 7-1 681 872 bp Feature: domain Description: Cas_CXXC_CXXC Location: 1682061-1682208 bp Feature: domain Description: Cas_CXXC_CXXC Location: 1 682061 -1 682208 bp Feature: gene Location: 1682128-1682805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1682395-1682704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 682395-1 682704 bp Feature: gene Location: 1683410-1684954 bp Feature: domain Description: VirD4 Location: 1683653-1683977 bp Feature: domain Description: VirD4 Location: 1 683653-1 683977 bp Feature: domain Description: VirD4 Location: 1684055-1684931 bp Feature: domain Description: VirD4 Location: 1 684055-1 684931 bp Feature: gene Location: 1684951-1685442 bp Feature: domain Description: DUF3801 Location: 1685068-1685425 bp Feature: domain Description: DUF3801 Location: 1 685068-1 685425 bp Feature: gene Location: 2517169-2517399 bp Feature: gene Location: 2517418-2518731 bp Feature: domain Description: COG3547 Location: 2517550-2517856 bp Feature: domain Description: COG3547 Location: 251 7550-251 7856 bp Feature: domain Description: COG3547 Location: 2518195-2518489 bp Feature: domain Description: COG3547 Location: 251 81 95-251 8489 bp Feature: gene Location: 2519013-2519444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2519364-2519427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 9364-251 9427 bp Feature: gene Location: 2519776-2520381 bp Feature: domain Description: PRK08295 Location: 2519782-2520373 bp Feature: domain Description: PRK08295 Location: 251 9782-2520373 bp Feature: gene Location: 2520438-2521184 bp Feature: domain Description: SpoU Location: 2520447-2521176 bp Feature: domain Description: SpoU Location: 2520447-2521 1 76 bp Feature: gene Location: 2945576-2946052 bp Feature: domain Description: DUF3801 Location: 2945639-2946020 bp Feature: domain Description: DUF3801 Location: 2945639-2946020 bp Feature: gene Location: 2946049-2947542 bp Feature: domain Description: VirD4 Location: 2946265-2947519 bp Feature: domain Description: VirD4 Location: 2946265-294751 9 bp Feature: gene Location: 2948147-2949973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2948414-2949251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294841 4-2949251 bp Feature: domain Description: Intron_maturas2 Location: 2949359-2949614 bp Feature: domain Description: Intron_maturas2 Location: 2949359-294961 4 bp Feature: gene Location: 2949986-2950405 bp Feature: gene Location: 2950635-2950994 bp Feature: gene Location: 3056851-3057195 bp Feature: domain Description: Avd_like Location: 3056875-3057187 bp Feature: domain Description: Avd_like Location: 3056875-30571 87 bp Feature: gene Location: 3057234-3057515 bp Feature: gene Location: 3057614-3058741 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3057827-3058496 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3057827-3058496 bp Feature: gene Location: 3058732-3059088 bp Feature: domain Description: 7tmA_NPYR-like Location: 3058747-3058900 bp Feature: domain Description: 7tmA_NPYR-like Location: 3058747-3058900 bp Feature: gene Location: 3059103-3059480 bp Feature: domain Description: KOG4232 Location: 3059139-3059370 bp Feature: domain Description: KOG4232 Location: 30591 39-3059370 bp Feature: gene Location: 3858356-3858526 bp Feature: domain Description: TnpW Location: 3858413-3858512 bp Feature: domain Description: TnpW Location: 385841 3-385851 2 bp Feature: gene Location: 3858572-3859516 bp Feature: domain Description: VirD4 Location: 3858581-3859493 bp Feature: domain Description: VirD4 Location: 3858581 -3859493 bp Feature: gene Location: 3860121-3861947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860388-3861225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860388-3861 225 bp Feature: domain Description: Intron_maturas2 Location: 3861333-3861588 bp Feature: domain Description: Intron_maturas2 Location: 3861 333-3861 588 bp Feature: gene Location: 3861960-3862379 bp Feature: gene Location: 3862609-3862893 bp Feature: gene Location: 5061124-5062488 bp Feature: domain Description: TraC-F-type Location: 5061145-5062345 bp Feature: domain Description: TraC-F-type Location: 5061 1 45-5062345 bp Feature: gene Location: 5062900-5063622 bp Feature: domain Description: PHA02517 Location: 5062906-5063611 bp Feature: domain Description: PHA0251 7 Location: 5062906-506361 1 bp Feature: gene Location: 5063943-5065901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5064279-5065017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5064279-506501 7 bp Feature: domain Description: HNHc Note: nucleases Location: 5065572-5065710 bp Feature: domain Description: HNHc Note: nucleases Location: 5065572-506571 0 bp Feature: gene Location: 5066625-5067683 bp Feature: gene Location: 5067613-5068035 bp Feature: domain Description: PrgI Location: 5067628-5067901 bp Feature: domain Description: PrgI Location: 5067628-5067901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), GIIM (pfam08388), DDE_5 (pfam13546), DDE_Tnp_2 (pfam04693)
TraG-D_C (pfam12696), Maff2 (pfam12750), HNHc (smart00507), PrgI (pfam12666), TnpV (pfam14198), Cas_CXXC_CXXC (pfam09706), COG3547 (Transposase ), PRK08295 (RNA polymerase sporulation sigma factor SigH), SpoU (COG0566), Avd_like (cd16376)
RVT-DGRs, 7tmA_NPYR-like (cd15203), KOG4232 (KOG4232, Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase ), TnpW (pfam14202), TraC-F-type (TIGR02746), PHA02517 (putative transposase OrfB; Reviewed)

Seq: WUQX01000002.1 Lachnospiraceae bacterium WCA-9-b2 tig00000002_pilon, whole genome shotgun sequence (49487 bp)
Overview 1 RT 1: 454-5415 bp Neighborhood of RT #1 [454, 5415] VirD4 RVT-GII Intron_maturas2 Feature: gene Location: 454-888 bp Feature: gene Location: 1116-2030 bp Feature: domain Description: VirD4 Location: 1137-2013 bp Feature: domain Description: VirD4 Location: 1137-2 013 bp Feature: gene Location: 2649-4475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2916-3753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 916-3753 bp Feature: domain Description: Intron_maturas2 Location: 3861-4116 bp Feature: domain Description: Intron_maturas2 Location: 3861-4116 bp Feature: gene Location: 4495-4905 bp Feature: gene Location: 4975-5415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348)