myRT

myRT report for GCA_009830935.1_ASM983093v1

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Seq: VWVW01000034.1 Nocardiopsis sp. FR6 contig034, whole genome shotgun sequence (84858 bp)
Overview 1 RT 1: 45864-50259 bp Neighborhood of RT #1 [45864, 50291] PRK05755 GT4_PimA-like RVT-CRISPR-like WbqC LmbE Feature: gene Location: 45864-46706 bp Feature: domain Description: PRK05755 Location: 45879-46644 bp Feature: domain Description: PRK05755 Location: 45879-46644 bp Feature: gene Location: 46782-48083 bp Feature: domain Description: GT4_PimA-like Location: 47178-48009 bp Feature: domain Description: GT4_PimA-like Location: 471 78-48009 bp Feature: gene Location: 48095-48874 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 48299-48854 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 48299-48854 bp Feature: gene Location: 48874-49623 bp Feature: domain Description: WbqC Location: 48910-49546 bp Feature: domain Description: WbqC Location: 4891 0-49546 bp Feature: gene Location: 49626-50291 bp Feature: domain Description: LmbE Location: 49671-50259 bp Feature: domain Description: LmbE Location: 49671 -50259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05755 (DNA polymerase I; Provisional), GT4_PimA-like (cd03801), RVT-CRISPR, WbqC (pfam08889), LmbE (COG2120)

Seq: VWVW01000053.1 Nocardiopsis sp. FR6 contig053, whole genome shotgun sequence (36235 bp)
Overview 1 RT 1: 3513-6565 bp Neighborhood of RT #1 [3513, 6609] YfmG RVT-CRISPR-like NrdG PTPS Feature: gene Location: 3513-3950 bp Feature: gene Location: 3947-4516 bp Feature: domain Description: YfmG Location: 4097-4511 bp Feature: domain Description: YfmG Location: 4097-4511 bp Feature: gene Location: 4519-5298 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4741-5260 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4741-52 60 bp Feature: gene Location: 5450-6205 bp Feature: domain Description: NrdG Location: 5501-6188 bp Feature: domain Description: NrdG Location: 5501-6188 bp Feature: gene Location: 6202-6609 bp Feature: domain Description: PTPS Location: 6211-6565 bp Feature: domain Description: PTPS Location: 62 11-6565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-CRISPR, NrdG (TIGR02491), PTPS (pfam01242)

Seq: VWVW01000080.1 Nocardiopsis sp. FR6 contig080, whole genome shotgun sequence (1984 bp)
Overview 1 RT 1: 116-1460 bp Neighborhood of RT #1 [116, 1558] RVT-GII GIIM Feature: gene Location: 116-1558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 6-1163 bp Feature: domain Description: GIIM Note: maturase Location: 1253-1460 bp Feature: domain Description: GIIM Note: maturase Location: 1253 -1460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)