myRT

myRT report for GCA_009846485.1_ASM984648v1

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Seq: ML776472.1 Microcoleus sp. IPPAS B-353 genomic scaffold scaffold1, whole genome shotgun sequence (4866307 bp)
Overview 1 RT 1: 941068-945540 bp 2 RT 2: 1656221-1661047 bp 3 RT 3: 2066233-2071756 bp 4 RT 4: 2270540-2276494 bp 5 RT 5: 3013258-3024048 bp 6 RT 6: 3122617-3128187 bp Neighborhood of RT #1 [941068, 945540] Uma2 RVT_N RVT-GII GIIM HNH DUF2887 Neighborhood of RT #2 [1656221, 1661121] STKc_PknB_like GUN4 RVT_N RVT-GII GIIM HNH PIN_VapC-like Neighborhood of RT #3 [2066233, 2071756] TPR TPR_1 TPR RVT_N RVT-GII GIIM HNH PRK05463 Neighborhood of RT #4 [2270540, 2276997] TIGR03985 Csx3_III-U RVT-AbiP2 Cas6 Csm6_III-A Neighborhood of RT #5 [3013258, 3024437] HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind RVT_N RVT-GII GIIM HNH DUF1565 SLH SLH SLH SLH SLH NMT1_2 Neighborhood of RT #6 [3122617, 3128234] DDE_Tnp_1 YadD RVT_N RVT-GII GIIM HNH Sm_multidrug_ex Feature: gene Location: 941068-941385 bp Feature: gene Location: 941695-942369 bp Feature: domain Description: Uma2 Location: 941755-942262 bp Feature: domain Description: Uma2 Location: 941 755-942262 bp Feature: gene Location: 943089-944828 bp Feature: domain Description: RVT_N Location: 943146-943392 bp Feature: domain Description: RVT_N Location: 9431 46-943392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943434-944112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943434-9441 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 944211-944418 bp Feature: domain Description: GIIM Note: maturase Location: 94421 1 -94441 8 bp Feature: domain Description: HNH Note: nucleases Location: 944661-944796 bp Feature: domain Description: HNH Note: nucleases Location: 944661 -944796 bp Feature: gene Location: 944960-945172 bp Feature: domain Description: DUF2887 Location: 944969-945107 bp Feature: domain Description: DUF2887 Location: 944969-9451 07 bp Feature: gene Location: 945331-945540 bp Feature: gene Location: 1656221-1657513 bp Feature: domain Description: STKc_PknB_like Location: 1656278-1657025 bp Feature: domain Description: STKc_PknB_like Location: 1 656278-1 657025 bp Feature: domain Description: GUN4 Location: 1657088-1657406 bp Feature: domain Description: GUN4 Location: 1 657088-1 657406 bp Feature: gene Location: 1657623-1657751 bp Feature: gene Location: 1657832-1659571 bp Feature: domain Description: RVT_N Location: 1657889-1658135 bp Feature: domain Description: RVT_N Location: 1 657889-1 6581 35 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1658177-1658855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6581 77-1 658855 bp Feature: domain Description: GIIM Note: maturase Location: 1658954-1659161 bp Feature: domain Description: GIIM Note: maturase Location: 1 658954-1 6591 61 bp Feature: domain Description: HNH Note: nucleases Location: 1659404-1659539 bp Feature: domain Description: HNH Note: nucleases Location: 1 659404-1 659539 bp Feature: gene Location: 1660409-1660630 bp Feature: gene Location: 1660633-1661121 bp Feature: domain Description: PIN_VapC-like Location: 1660699-1661047 bp Feature: domain Description: PIN_VapC-like Location: 1 660699-1 661 047 bp Feature: gene Location: 2066233-2066682 bp Feature: gene Location: 2066738-2067580 bp Feature: domain Description: TPR Location: 2066930-2067206 bp Feature: domain Description: TPR Location: 2066930-2067206 bp Feature: domain Description: TPR_1 Location: 2067230-2067323 bp Feature: domain Description: TPR_1 Location: 2067230-2067323 bp Feature: domain Description: TPR Location: 2067359-2067548 bp Feature: domain Description: TPR Location: 2067359-2067548 bp Feature: gene Location: 2067830-2069569 bp Feature: domain Description: RVT_N Location: 2067887-2068133 bp Feature: domain Description: RVT_N Location: 2067887-20681 33 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068175-2068853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20681 75-2068853 bp Feature: domain Description: GIIM Note: maturase Location: 2068952-2069159 bp Feature: domain Description: GIIM Note: maturase Location: 2068952-20691 59 bp Feature: domain Description: HNH Note: nucleases Location: 2069402-2069537 bp Feature: domain Description: HNH Note: nucleases Location: 2069402-2069537 bp Feature: gene Location: 2070497-2070955 bp Feature: domain Description: PRK05463 Location: 2070503-2070947 bp Feature: domain Description: PRK05463 Location: 2070503-2070947 bp Feature: gene Location: 2071535-2071756 bp Feature: gene Location: 2270540-2271979 bp Feature: domain Description: TIGR03985 Location: 2271230-2271971 bp Feature: domain Description: TIGR03985 Location: 2271 230-2271 971 bp Feature: gene Location: 2272041-2272964 bp Feature: domain Description: Csx3_III-U Location: 2272119-2272365 bp Feature: domain Description: Csx3_III-U Location: 22721 1 9-2272365 bp Feature: gene Location: 2273393-2274904 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2273819-2274272 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 227381 9-2274272 bp Feature: gene Location: 2275028-2275822 bp Feature: domain Description: Cas6 Location: 2275403-2275781 bp Feature: domain Description: Cas6 Location: 2275403-2275781 bp Feature: gene Location: 2275834-2276997 bp Feature: domain Description: Csm6_III-A Location: 2275975-2276494 bp Feature: domain Description: Csm6_III-A Location: 2275975-2276494 bp Feature: gene Location: 3013258-3013548 bp Feature: gene Location: 3014205-3017294 bp Feature: domain Description: HemolysinCabind Location: 3014313-3014343 bp Feature: domain Description: HemolysinCabind Location: 301 431 3-301 4343 bp Feature: domain Description: HemolysinCabind Location: 3014373-3014457 bp Feature: domain Description: HemolysinCabind Location: 301 4373-301 4457 bp Feature: domain Description: HemolysinCabind Location: 3014604-3014697 bp Feature: domain Description: HemolysinCabind Location: 301 4604-301 4697 bp Feature: domain Description: HemolysinCabind Location: 3014784-3014817 bp Feature: domain Description: HemolysinCabind Location: 301 4784-301 481 7 bp Feature: domain Description: HemolysinCabind Location: 3014967-3015051 bp Feature: domain Description: HemolysinCabind Location: 301 4967-301 5051 bp Feature: domain Description: HemolysinCabind Location: 3015387-3015441 bp Feature: domain Description: HemolysinCabind Location: 301 5387-301 5441 bp Feature: domain Description: HemolysinCabind Location: 3016341-3016425 bp Feature: domain Description: HemolysinCabind Location: 301 6341 -301 6425 bp Feature: gene Location: 3017436-3019175 bp Feature: domain Description: RVT_N Location: 3017493-3017739 bp Feature: domain Description: RVT_N Location: 301 7493-301 7739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3017781-3018459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 7781 -301 8459 bp Feature: domain Description: GIIM Note: maturase Location: 3018558-3018765 bp Feature: domain Description: GIIM Note: maturase Location: 301 8558-301 8765 bp Feature: domain Description: HNH Note: nucleases Location: 3019008-3019143 bp Feature: domain Description: HNH Note: nucleases Location: 301 9008-301 91 43 bp Feature: gene Location: 3019970-3022087 bp Feature: domain Description: DUF1565 Location: 3020000-3020786 bp Feature: domain Description: DUF1 565 Location: 3020000-3020786 bp Feature: domain Description: SLH Location: 3020924-3021044 bp Feature: domain Description: SLH Location: 3020924-3021 044 bp Feature: domain Description: SLH Location: 3021095-3021221 bp Feature: domain Description: SLH Location: 3021 095-3021 221 bp Feature: domain Description: SLH Location: 3021509-3021635 bp Feature: domain Description: SLH Location: 3021 509-3021 635 bp Feature: domain Description: SLH Location: 3021686-3021812 bp Feature: domain Description: SLH Location: 3021 686-3021 81 2 bp Feature: domain Description: SLH Location: 3021872-3022007 bp Feature: domain Description: SLH Location: 3021 872-3022007 bp Feature: gene Location: 3023139-3024437 bp Feature: domain Description: NMT1_2 Location: 3023268-3024048 bp Feature: domain Description: NMT1 _2 Location: 3023268-3024048 bp Feature: gene Location: 3122617-3123948 bp Feature: domain Description: DDE_Tnp_1 Location: 3123073-3123685 bp Feature: domain Description: DDE_Tnp_1 Location: 31 23073-31 23685 bp Feature: gene Location: 3124185-3125036 bp Feature: domain Description: YadD Location: 3124203-3125025 bp Feature: domain Description: YadD Location: 31 24203-31 25025 bp Feature: gene Location: 3125730-3127469 bp Feature: domain Description: RVT_N Location: 3125787-3126033 bp Feature: domain Description: RVT_N Location: 31 25787-31 26033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3126075-3126753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 26075-31 26753 bp Feature: domain Description: GIIM Note: maturase Location: 3126852-3127059 bp Feature: domain Description: GIIM Note: maturase Location: 31 26852-31 27059 bp Feature: domain Description: HNH Note: nucleases Location: 3127302-3127437 bp Feature: domain Description: HNH Note: nucleases Location: 31 27302-31 27437 bp Feature: gene Location: 3127501-3127752 bp Feature: gene Location: 3127800-3128234 bp Feature: domain Description: Sm_multidrug_ex Location: 3127863-3128187 bp Feature: domain Description: Sm_multidrug_ex Location: 31 27863-31 281 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF2887 (pfam11103), STKc_PknB_like (cd14014), GUN4 (pfam05419), PIN_VapC-like (cd18715), TPR (smart00028)
TPR_1 (pfam00515), PRK05463 (putative hydro-lyase), TIGR03985 (CRISPR-associated protein, TIGR03985 family), Csx3_III-U (cl09837), RVT-AbiP2, Cas6 (pfam09559), Csm6_III-A (cl19028), HemolysinCabind (pfam00353), DUF1565 (pfam07602), SLH (pfam00395)
NMT1_2 (pfam13379), DDE_Tnp_1 (pfam01609), YadD (COG5464), Sm_multidrug_ex (pfam06695)