myRT

myRT report for GCA_009848355.1_ASM984835v1

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Seq: WVWF01000033.1 Escherichia coli strain WX090 NODE_33_length_40804_cov_93.219068, whole genome shotgun sequence (40804 bp)
Overview 1 RT 1: 570-5849 bp Neighborhood of RT #1 [570, 5965] RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 570-710 bp Feature: gene Location: 820-1560 bp Feature: gene Location: 1557-3185 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1965-2394 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 965-2394 bp Feature: gene Location: 3178-4362 bp Feature: domain Description: PRK09692 Location: 3184-4339 bp Feature: domain Description: PRK09692 Location: 31 84-4339 bp Feature: gene Location: 4688-5965 bp Feature: domain Description: Phage_int_SAM_5 Location: 5000-5237 bp Feature: domain Description: Phage_int_SAM_5 Location: 5000-5237 bp Feature: domain Description: INT_C_like_1 Location: 5333-5849 bp Feature: domain Description: INT_C_like_1 Location: 5333-5849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: WVWF01000054.1 Escherichia coli strain WX090 NODE_54_length_9990_cov_87.846565, whole genome shotgun sequence (9990 bp)
Overview 1 RT 1: 2322-6322 bp Neighborhood of RT #1 [2322, 6330] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2322-3683 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 2 32 5-3657 bp Feature: gene Location: 3736-4107 bp Feature: gene Location: 4329-4775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: gene Location: 4823-4972 bp Feature: gene Location: 5299-6330 bp Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Feature: domain Description: Asparaginase_2 Location: 5389-632 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)