myRT

myRT report for GCA_009857595.1_ASM985759v1

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Seq: WWCU01000017.1 Massilia aquatica strain FT127W NODE_17_length_126638_cov_29.042850_17, whole genome shotgun sequence (126638 bp)
Overview 1 RT 1: 122780-126287 bp Neighborhood of RT #1 [122780, 126349] TnpB_IS66 DDE_Tnp_IS66_C RVT-GII PHA02517 InsE Feature: gene Location: 122780-123127 bp Feature: domain Description: TnpB_IS66 Location: 122804-123083 bp Feature: domain Description: TnpB_IS66 Location: 1 22804-1 23083 bp Feature: gene Location: 123352-123483 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 123358-123460 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 23358-1 23460 bp Feature: gene Location: 124011-125063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124386-125052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24386-1 25052 bp Feature: gene Location: 125100-126005 bp Feature: domain Description: PHA02517 Location: 125142-125874 bp Feature: domain Description: PHA0251 7 Location: 1 251 42-1 25874 bp Feature: gene Location: 126059-126349 bp Feature: domain Description: InsE Location: 126074-126287 bp Feature: domain Description: InsE Location: 1 26074-1 26287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), DDE_Tnp_IS66_C (pfam13817), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: WWCU01000030.1 Massilia aquatica strain FT127W NODE_30_length_77665_cov_25.898721_30, whole genome shotgun sequence (77665 bp)
Overview 1 RT 1: 22118-27312 bp Neighborhood of RT #1 [22118, 27317] DUF4440 DUF1877 RVT-Retrons COG2936 YXWGXW TSP3 Feature: gene Location: 22118-22603 bp Feature: domain Description: DUF4440 Location: 22241-22556 bp Feature: domain Description: DUF4440 Location: 2 2 2 41-2 2 556 bp Feature: gene Location: 22634-23131 bp Feature: domain Description: DUF1877 Location: 22637-23120 bp Feature: domain Description: DUF1877 Location: 2 2 637-2 312 0 bp Feature: gene Location: 23216-24595 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23723-24362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 372 3-2 4362 bp Feature: gene Location: 24817-26748 bp Feature: domain Description: COG2936 Location: 24943-26740 bp Feature: domain Description: COG2 936 Location: 2 4943-2 6740 bp Feature: gene Location: 26916-27317 bp Feature: domain Description: YXWGXW Location: 27048-27123 bp Feature: domain Description: YXWGXW Location: 2 7048-2 712 3 bp Feature: domain Description: TSP3 Location: 27213-27312 bp Feature: domain Description: TSP3 Location: 2 72 13-2 7312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4440 (pfam14534), DUF1877 (pfam08974), RVT-Retrons, COG2936 (Predicted acyl esterase ), YXWGXW (pfam12779), TSP3 (sd00002)

Seq: WWCU01000073.1 Massilia aquatica strain FT127W NODE_73_length_11054_cov_27.808456_73, whole genome shotgun sequence (11054 bp)
Overview 1 RT 1: 1702-10890 bp Neighborhood of RT #1 [1702, 10890] INT_Rci_Hp1_C INT_Rci_Hp1_C RVT-UG5 Feature: gene Location: 1702-2193 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1714-2158 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1714-2158 bp Feature: gene Location: 2212-3498 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2800-3424 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2800-3 424 bp Feature: gene Location: 3916-6918 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4411-4909 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4411-4909 bp Feature: gene Location: 6922-10311 bp Feature: gene Location: 10615-10890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-UG5