myRT

myRT report for GCA_009857775.1_ASM985777v1

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Seq: WWCC01000013.1 Klebsiella pneumoniae strain BC_4486 NODE_13_length_144339_cov_575.75, whole genome shotgun sequence (144339 bp)
Overview 1 RT 1: 11595-18043 bp Neighborhood of RT #1 [11595, 18043] Nuc_deoxyrib_tr RVT-Retrons AAA_21 Feature: gene Location: 11595-11846 bp Feature: gene Location: 11876-12712 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 12365-12536 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 2365-1 2536 bp Feature: gene Location: 13511-14467 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13691-14225 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3691 -1 4225 bp Feature: gene Location: 14946-16340 bp Feature: domain Description: AAA_21 Location: 15252-15474 bp Feature: domain Description: AAA_21 Location: 1 5252-1 5474 bp Feature: gene Location: 17738-18043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_21 (pfam13304)

Seq: WWCC01000015.1 Klebsiella pneumoniae strain BC_4486 NODE_15_length_142073_cov_564.663, whole genome shotgun sequence (142073 bp)
Overview 1 RT 1: 113424-116498 bp Neighborhood of RT #1 [113424, 116503] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 113424-113642 bp Feature: domain Description: PRK09678 Location: 113427-113625 bp Feature: domain Description: PRK09678 Location: 11342 7-11362 5 bp Feature: gene Location: 113889-114077 bp Feature: gene Location: 114046-114819 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 114181-114634 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 114181-114634 bp Feature: gene Location: 115434-115916 bp Feature: domain Description: SmpB Location: 115464-115908 bp Feature: domain Description: SmpB Location: 115464-115908 bp Feature: gene Location: 116027-116503 bp Feature: domain Description: PRK10724 Location: 116033-116498 bp Feature: domain Description: PRK1072 4 Location: 116033-116498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: WWCC01000052.1 Klebsiella pneumoniae strain BC_4486 NODE_52_length_12739_cov_997.318, whole genome shotgun sequence (12739 bp)
Overview 1 RT 1: 8800-12739 bp Neighborhood of RT #1 [8800, 12738] RVT-GII PRK10276 umuC Feature: gene Location: 8800-9231 bp Feature: gene Location: 9363-9632 bp Feature: gene Location: 9701-11188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10106-10796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10106-10796 bp Feature: gene Location: 11594-12025 bp Feature: domain Description: PRK10276 Location: 11645-12008 bp Feature: domain Description: PRK10276 Location: 11645-12008 bp Feature: gene Location: 12025-12738 bp Feature: domain Description: umuC Location: 12028-12739 bp Feature: domain Description: umuC Location: 12028-1273 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)