myRT

myRT report for GCA_009861585.1_ASM986158v1

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Seq: WNXH01000002.1 Streptococcus suis strain 10-36905 Suis36905_39, whole genome shotgun sequence (208711 bp)
Overview 1 RT 1: 138966-141798 bp Neighborhood of RT #1 [138966, 141798] OmpR YozG RVT-GII RepA_N Feature: gene Location: 138966-139664 bp Feature: domain Description: OmpR Location: 138975-139656 bp Feature: domain Description: OmpR Location: 1 38975-1 39656 bp Feature: gene Location: 139685-139897 bp Feature: domain Description: YozG Location: 139688-139886 bp Feature: domain Description: YozG Location: 1 39688-1 39886 bp Feature: gene Location: 140054-140836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140063-140735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40063-1 40735 bp Feature: gene Location: 140905-141429 bp Feature: domain Description: RepA_N Location: 140950-141172 bp Feature: domain Description: RepA_N Location: 1 40950-1 41 1 72 bp Feature: gene Location: 141517-141798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), YozG (COG3655), RVT-GII, RepA_N (pfam06970)

Seq: WNXH01000008.1 Streptococcus suis strain 10-36905 Suis36905_45, whole genome shotgun sequence (117134 bp)
Overview 1 RT 1: 66561-76748 bp Neighborhood of RT #1 [66561, 76748] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 66561-66860 bp Feature: gene Location: 66931-68274 bp Feature: domain Description: KOG1000 Location: 67210-67525 bp Feature: domain Description: KOG1000 Location: 672 10-6752 5 bp Feature: gene Location: 68412-70199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68682-69474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68682 -69474 bp Feature: domain Description: Intron_maturas2 Location: 69579-69810 bp Feature: domain Description: Intron_maturas2 Location: 69579-69810 bp Feature: domain Description: HNHc Note: nucleases Location: 69975-70161 bp Feature: domain Description: HNHc Note: nucleases Location: 69975-70161 bp Feature: gene Location: 70688-76147 bp Feature: domain Description: N6_Mtase Location: 72698-73289 bp Feature: domain Description: N6_Mtase Location: 72 698-732 89 bp Feature: domain Description: COG4646 Location: 73880-76004 bp Feature: domain Description: COG4646 Location: 73880-76004 bp Feature: gene Location: 76197-76748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: WNXH01000016.1 Streptococcus suis strain 10-36905 Suis36905_53, whole genome shotgun sequence (60744 bp)
Overview 1 RT 1: 27037-33127 bp Neighborhood of RT #1 [27037, 33144] PucR MalK RVT-GII RVT-GII GIIM CadD YgaE Feature: gene Location: 27037-27891 bp Feature: domain Description: PucR Location: 27700-27877 bp Feature: domain Description: PucR Location: 27700-27877 bp Feature: gene Location: 28001-29131 bp Feature: domain Description: MalK Location: 28004-29108 bp Feature: domain Description: MalK Location: 28004-29108 bp Feature: gene Location: 29983-30438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30187-30412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0187-3 0412 bp Feature: gene Location: 30438-31259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30441-30801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0441-3 0801 bp Feature: domain Description: GIIM Note: maturase Location: 30855-31068 bp Feature: domain Description: GIIM Note: maturase Location: 3 0855-3 1068 bp Feature: gene Location: 31334-31921 bp Feature: domain Description: CadD Location: 31346-31913 bp Feature: domain Description: CadD Location: 3 13 46-3 1913 bp Feature: gene Location: 32179-33144 bp Feature: domain Description: YgaE Location: 32188-33127 bp Feature: domain Description: YgaE Location: 3 2188-3 3 127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PucR (pfam07905), MalK (COG3839), RVT-GII, GIIM (pfam08388), CadD (COG4300), YgaE (COG4129)