myRT

myRT report for GCA_009870665.1_ASM987066v1

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Seq: WLZR01000002.1 Streptococcus halichoeri strain S212 NODE_2_length_276237_cov_80.074836, whole genome shotgun sequence (276237 bp)
Overview 1 RT 1: 18230-31188 bp 2 RT 2: 78312-88481 bp 3 RT 3: 141107-145407 bp Neighborhood of RT #1 [18230, 31226] HELICc RVT-GII Intron_maturas2 HNHc PHA03411 COG4646 COG4646 DUF1016_N YhcG_C Neighborhood of RT #2 [78312, 88481] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #3 [141107, 145415] RVT-GII alaS Feature: gene Location: 18230-18907 bp Feature: gene Location: 18932-20755 bp Feature: domain Description: HELICc Location: 18953-19310 bp Feature: domain Description: HELICc Location: 1 8953-1 931 0 bp Feature: gene Location: 20950-22737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21220-22012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 220-2201 2 bp Feature: domain Description: Intron_maturas2 Location: 22117-22348 bp Feature: domain Description: Intron_maturas2 Location: 221 1 7-22348 bp Feature: domain Description: HNHc Note: nucleases Location: 22513-22699 bp Feature: domain Description: HNHc Note: nucleases Location: 2251 3-22699 bp Feature: gene Location: 23226-30083 bp Feature: domain Description: PHA03411 Location: 26823-27072 bp Feature: domain Description: PHA0341 1 Location: 26823-27072 bp Feature: domain Description: COG4646 Location: 27387-28143 bp Feature: domain Description: COG4646 Location: 27387-281 43 bp Feature: domain Description: COG4646 Location: 28410-29928 bp Feature: domain Description: COG4646 Location: 2841 0-29928 bp Feature: gene Location: 30195-31226 bp Feature: domain Description: DUF1016_N Location: 30261-30669 bp Feature: domain Description: DUF1 01 6_N Location: 30261 -30669 bp Feature: domain Description: YhcG_C Location: 30735-31188 bp Feature: domain Description: YhcG_C Location: 30735-31 1 88 bp Feature: gene Location: 78312-78611 bp Feature: gene Location: 78682-80025 bp Feature: domain Description: KOG1000 Location: 78961-79276 bp Feature: domain Description: KOG1 000 Location: 78961 -79276 bp Feature: gene Location: 80163-81950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80433-81225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80433-81 225 bp Feature: domain Description: Intron_maturas2 Location: 81330-81561 bp Feature: domain Description: Intron_maturas2 Location: 81 330-81 561 bp Feature: domain Description: HNHc Note: nucleases Location: 81726-81912 bp Feature: domain Description: HNHc Note: nucleases Location: 81 726-81 91 2 bp Feature: gene Location: 82439-87880 bp Feature: domain Description: N6_Mtase Location: 84431-85022 bp Feature: domain Description: N6_Mtase Location: 84431 -85022 bp Feature: domain Description: COG4646 Location: 85613-87737 bp Feature: domain Description: COG4646 Location: 8561 3-87737 bp Feature: gene Location: 87930-88481 bp Feature: gene Location: 141107-141289 bp Feature: gene Location: 141534-141767 bp Feature: gene Location: 141806-142339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141968-142337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 968-1 42337 bp Feature: gene Location: 142326-142622 bp Feature: gene Location: 142743-145415 bp Feature: domain Description: alaS Location: 142809-145407 bp Feature: domain Description: alaS Location: 1 42809-1 45407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HELICc (smart00490), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1016_N (pfam17761), YhcG_C, KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), N6_Mtase (pfam02384)
alaS (TIGR00344)