myRT

myRT report for GCA_009876475.1_ASM987647v1

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Seq: WWUB01000010.1 Clostridium beijerinckii strain BIOML-A10 scaffold10_size134939, whole genome shotgun sequence (134939 bp)
Overview 1 RT 1: 1-3712 bp Neighborhood of RT #1 [1, 3735] FGE-sulfatase Avd_like RVT-DGRs HTH_26 Phage_holin_4_1 Feature: gene Location: 1-954 bp Feature: domain Description: FGE-sulfatase Location: 73-421 bp Feature: domain Description: FGE-sulfatase Location: 73-421 bp Feature: gene Location: 1087-1428 bp Feature: domain Description: Avd_like Location: 1111-1417 bp Feature: domain Description: Avd_like Location: 1 1 1 1 -1 41 7 bp Feature: gene Location: 1725-2801 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1938-2592 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 938-2592 bp Feature: gene Location: 3013-3225 bp Feature: domain Description: HTH_26 Location: 3028-3211 bp Feature: domain Description: HTH_26 Location: 3028-321 1 bp Feature: gene Location: 3289-3735 bp Feature: domain Description: Phage_holin_4_1 Location: 3358-3712 bp Feature: domain Description: Phage_holin_4_1 Location: 3358-371 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, HTH_26 (pfam13443), Phage_holin_4_1 (pfam05105)

Seq: WWUB01000020.1 Clostridium beijerinckii strain BIOML-A10 scaffold20_size108818, whole genome shotgun sequence (108818 bp)
Overview 1 RT 1: 76178-81320 bp Neighborhood of RT #1 [76178, 81325] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76178-76411 bp Feature: gene Location: 76492-77892 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: domain Description: DUF4145 Location: 77575-77851 bp Feature: gene Location: 78837-79454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-79230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78843-792 30 bp Feature: domain Description: GIIM Note: maturase Location: 79284-79434 bp Feature: domain Description: GIIM Note: maturase Location: 792 84-79434 bp Feature: gene Location: 79568-79831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-79829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79733-7982 9 bp Feature: gene Location: 80563-80946 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: domain Description: SHOCT Location: 80857-80938 bp Feature: gene Location: 80966-81325 bp Feature: domain Description: SHOCT Location: 81251-81320 bp Feature: domain Description: SHOCT Location: 812 51-8132 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUB01000033.1 Clostridium beijerinckii strain BIOML-A10 scaffold33_size54509, whole genome shotgun sequence (54509 bp)
Overview 1 RT 1: 51014-54006 bp Neighborhood of RT #1 [51014, 54506] XhlA HTH_26 RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 51014-51250 bp Feature: domain Description: XhlA Location: 51032-51227 bp Feature: domain Description: XhlA Location: 5103 2-51227 bp Feature: gene Location: 51318-51530 bp Feature: domain Description: HTH_26 Location: 51333-51516 bp Feature: domain Description: HTH_26 Location: 513 3 3 -51516 bp Feature: gene Location: 51742-52818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: gene Location: 53115-53456 bp Feature: domain Description: Avd_like Location: 53139-53445 bp Feature: domain Description: Avd_like Location: 53 13 9-53 445 bp Feature: gene Location: 53589-54506 bp Feature: domain Description: FGE-sulfatase Location: 53658-54006 bp Feature: domain Description: FGE-sulfatase Location: 53 658-54006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), HTH_26 (pfam13443), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: WWUB01000086.1 Clostridium beijerinckii strain BIOML-A10 scaffold86_size10492, whole genome shotgun sequence (10492 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2462-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 62-3080 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)