myRT

myRT report for GCA_009876525.1_ASM987652v1

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Seq: WWUC01000010.1 Clostridium beijerinckii strain BIOML-A9 scaffold10_size133956, whole genome shotgun sequence (134441 bp)
Overview 1 RT 1: 132294-134095 bp Neighborhood of RT #1 [132294, 134304] Phage_holin_4_1 HTH_26 RVT-DGRs Feature: gene Location: 132294-132740 bp Feature: domain Description: Phage_holin_4_1 Location: 132363-132717 bp Feature: domain Description: Phage_holin_4_1 Location: 1 32363-1 3271 7 bp Feature: gene Location: 132804-133016 bp Feature: domain Description: HTH_26 Location: 132819-133002 bp Feature: domain Description: HTH_26 Location: 1 3281 9-1 33002 bp Feature: gene Location: 133228-134304 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 133441-134095 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 33441 -1 34095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), HTH_26 (pfam13443), RVT-DGRs

Seq: WWUC01000016.1 Clostridium beijerinckii strain BIOML-A9 scaffold16_size109566, whole genome shotgun sequence (109566 bp)
Overview 1 RT 1: 76926-82068 bp Neighborhood of RT #1 [76926, 82073] DUF4145 RVT-GII GIIM RVT-GII SHOCT SHOCT Feature: gene Location: 76926-77159 bp Feature: gene Location: 77240-78640 bp Feature: domain Description: DUF4145 Location: 78323-78599 bp Feature: domain Description: DUF4145 Location: 7832 3-78599 bp Feature: gene Location: 79585-80202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79591-79978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79591-79978 bp Feature: domain Description: GIIM Note: maturase Location: 80032-80182 bp Feature: domain Description: GIIM Note: maturase Location: 80032 -80182 bp Feature: gene Location: 80316-80579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80481-80577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80481-80577 bp Feature: gene Location: 81311-81694 bp Feature: domain Description: SHOCT Location: 81605-81686 bp Feature: domain Description: SHOCT Location: 81605-81686 bp Feature: gene Location: 81714-82073 bp Feature: domain Description: SHOCT Location: 81999-82068 bp Feature: domain Description: SHOCT Location: 81999-82 068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851)

Seq: WWUC01000034.1 Clostridium beijerinckii strain BIOML-A9 scaffold34_size53987, whole genome shotgun sequence (54216 bp)
Overview 1 RT 1: 51014-54061 bp Neighborhood of RT #1 [51014, 54072] XhlA HTH_26 RVT-DGRs Avd_like Avd_like Feature: gene Location: 51014-51250 bp Feature: domain Description: XhlA Location: 51032-51227 bp Feature: domain Description: XhlA Location: 5103 2-51227 bp Feature: gene Location: 51318-51530 bp Feature: domain Description: HTH_26 Location: 51333-51516 bp Feature: domain Description: HTH_26 Location: 513 3 3 -51516 bp Feature: gene Location: 51742-52818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51955-52609 bp Feature: gene Location: 53115-53456 bp Feature: domain Description: Avd_like Location: 53139-53445 bp Feature: domain Description: Avd_like Location: 53 13 9-53 445 bp Feature: gene Location: 53731-54072 bp Feature: domain Description: Avd_like Location: 53755-54061 bp Feature: domain Description: Avd_like Location: 53 755-54061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), HTH_26 (pfam13443), RVT-DGRs, Avd_like (cd16376)

Seq: WWUC01000094.1 Clostridium beijerinckii strain BIOML-A9 scaffold94_size11256, whole genome shotgun sequence (11256 bp)
Overview 1 RT 1: 52-5337 bp Neighborhood of RT #1 [52, 5351] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 52-1452 bp Feature: domain Description: Tar Location: 406-1420 bp Feature: domain Description: Tar Location: 4 06-14 20 bp Feature: gene Location: 1617-1871 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: domain Description: CheW Location: 1632-1863 bp Feature: gene Location: 2105-3520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2462-3080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 62-3080 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: domain Description: GIIM Note: maturase Location: 3131-3359 bp Feature: gene Location: 3996-4388 bp Feature: domain Description: COG2703 Location: 3999-4383 bp Feature: domain Description: COG2703 Location: 3999-4 383 bp Feature: gene Location: 4632-5351 bp Feature: domain Description: PBP1_GGBP Location: 4746-5337 bp Feature: domain Description: PBP1_GGBP Location: 4 74 6-5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)